YRC Public Data Repository - Protein Structure Prediction

Protein:	CALCB_RAT
Organism:	Rattus norvegicus
Length:	134 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CALCB_RAT.

Description	E-value	Query Range	Subject Range
gi\|109107198 - gi\|109107198\|ref\|XP_001092199.1\| PREDICTED: calcitonin-related polypeptide, beta [Macaca mulatta]	202.0	[0..1]	[133..1]
CALCB - calcitonin-related polypeptide beta	197.0	[0..1]	[133..1]
gi\|114636335 - gi\|114636335\|ref\|XP_529390.2\| PREDICTED: similar to Calcitonin gene-related peptide 2 precursor (Cal...	197.0	[0..1]	[133..12]
CALCA_CHICK - Calcitonin gene-related peptide OS=Gallus gallus GN=CALCA PE=2 SV=2	193.0	[0..1]	[134..1]
gi\|116062123, gi... - gi\|157278525\|ref\|NP_001098364.1\| calcitonin gene-related peptide 2 [Oryzias latipes], gi\|116062123\|d...	192.0	[0..1]	[134..1]
gi\|19772948 - gi\|19772948\|emb\|CAC81277.1\| calcitonin gene related peptide [Takifugu rubripes]	191.0	[0..1]	[134..1]
CALCA_RAT - Calcitonin gene-related peptide 1 OS=Rattus norvegicus GN=Calca PE=2 SV=1	188.0	[0..1]	[133..1]
CRSP3_PIG - Calcitonin receptor-stimulating peptide 3 OS=Sus scrofa GN=CRSP3 PE=2 SV=1	186.0	[0..1]	[133..1]
gi\|84993293, gi\|... - gi\|84993293\|gb\|AAI11866.1\| Calcitonin-related polypeptide, beta [Mus musculus], gi\|74202057\|dbj\|BAE2...	184.0	[0..1]	[133..1]

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Predicted Domain #1

Region A:
Residues: [1-134]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDFWKFFPFL ALSSMWVLCL ASSLQAAPFR SALESSLDLG TLSDQEKHLL LAALIQDYEQ  60
   61 KARKLEQEEQ ETEGSRKGSS SSVISQKRSC NTATCVTHRL AGLLRRSGGV VKDNFVPTNV 120
  121 GSKAFGRRRR DLRV

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits