YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|34853280, gi\|...
Organism:	Rattus norvegicus
Length:	186 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|34853280, gi|....

Description	E-value	Query Range	Subject Range
gi\|37726728 - gi\|37726728\|gb\|AAO34515.1\| TATA-binding protein [Petromyzon marinus]	8.0E-82	[3..184]	[108..291]
gi\|17298078 - gi\|17298078\|dbj\|BAB78513.1\| TATA-box binding protein [Lethenteron reissneri]	1.0E-81	[3..184]	[117..300]
gi\|37726742 - gi\|37726742\|gb\|AAO34521.1\| TATA-binding protein [Eptatretus stoutii]	1.0E-81	[2..184]	[139..323]
gi\|66536790 - gi\|66536790\|ref\|XP_623088.1\| PREDICTED: similar to TATA-box-binding protein (TATA-box factor) (TATA-...	9.0E-81	[2..184]	[135..319]
gi\|37726730, gi\|... - gi\|37726734\|gb\|AAO34519.1\| TATA-binding protein isoform 3 [Branchiostoma floridae], gi\|37726730\|gb\|A...	9.0E-81	[2..184]	[147..330]
gi\|220942262, gi... - gi\|220952470\|gb\|ACL88778.1\| Tbp-PA [synthetic construct], gi\|220942262\|gb\|ACL83674.1\| Tbp-PA [synthe... Tbp-PA - The gene TATA binding protein is referred to in FlyBase by the symbol Dmel\Tbp (CG9874, FBgn0003687)...	1.0E-80	[2..184]	[168..352]
gi\|125807343, gi... - gi\|54635541\|gb\|EAL24944.1\| GA22088 [Drosophila pseudoobscura pseudoobscura], gi\|125807343\|ref\|XP_001... gi\|125807343\|ref... - GA22088-PA [Drosophila pseudoobscura], GA22088 [Drosophila pseudoobscura pseudoobscura] gi\|195149788, gi... - gi\|195149788\|ref\|XP_002015837.1\| GL11271 [Drosophila persimilis], gi\|194109684\|gb\|EDW31727.1\| GL1127...	3.0E-80	[2..184]	[160..344]
TBP_SPOFR - TATA-box-binding protein OS=Spodoptera frugiperda GN=Tbp PE=2 SV=1	5.0E-80	[2..184]	[123..307]

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Predicted Domain #1

Region A:
Residues: [1-186]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDADSDVALD ILITNVVCVF RTRCHLNLRK IALEGANVIY KRDVGKVLMK LRKPRITATI  60
   61 WSSGKIICTG ATSEEEAKFG ARRLARSLQK LGFQVIFTDF KVVNVLAVCN MPFEIRLPEF 120
  121 TKNNRPHASY EPELHPAVCY RIKSLRATLQ IFSTGSITVT GPNVKAVATA VEQIYPFVFE 180
  181 SRKEIL

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Detection Method:	PSI-BLAST
Confidence:	75.221849
Match:	1tghA
Description:	TATA-box binding protein (TBP), C-terminal domain
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits