YRC Public Data Repository - Protein Structure Prediction

Protein:	PDK2_RAT
Organism:	Rattus norvegicus
Length:	407 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PDK2_RAT.

Description	E-value	Query Range	Subject Range
gi\|150017029, gi... - gi\|82745764\|ref\|ZP_00908274.1\| Response regulator receiver:ATP-binding region, ATPase-like:Histidine...	293.0	[0..11]	[405..369]
gi\|91201482 - gi\|91201482\|emb\|CAJ74542.1\| similar to hybrid sensor [Candidatus Kuenenia stuttgartiensis]	285.0	[0..3]	[401..195]
gi\|119353802, gi... - gi\|67934719\|ref\|ZP_00527745.1\| PAS [Chlorobium phaeobacteroides DSM 266], gi\|67776212\|gb\|EAM35872.1\|...	281.0	[0..63]	[404..821]
gi\|82947675, gi\|... - gi\|83312834\|ref\|YP_423098.1\| Signal transduction histidine kinase [Magnetospirillum magneticum AMB-1...	277.0	[0..23]	[406..272]
gi\|106882912, gi... - gi\|119944738\|ref\|YP_942418.1\| sensor histidine kinase [Psychromonas ingrahamii 37], gi\|119863342\|gb\|...	277.0	[0..92]	[407..810]
gi\|78194171, gi\|... - gi\|78222916\|ref\|YP_384663.1\| PAS/PAC sensor hybrid histidine kinase [Geobacter metallireducens GS-15...	276.0	[0..67]	[405..784]
gi\|94263693, gi\|... - gi\|94263693\|ref\|ZP_01287501.1\| Response regulator receiver [delta proteobacterium MLMS-1], gi\|934558...	276.0	[0..51]	[402..275]
gi\|39983914, gi\|... - gi\|39997026\|ref\|NP_952977.1\| sensor histidine kinase/response regulator [Geobacter sulfurreducens PC...	276.0	[0..4]	[406..179]
gi\|116217517 - gi\|116217517\|ref\|ZP_01483316.1\| hypothetical protein VchoR_02000773 [Vibrio cholerae RC385]	275.0	[0..17]	[407..509]
gi\|194537581, gi... - gi\|254225353\|ref\|ZP_04918965.1\| sensory box sensor histidine kinase/response regulator [Vibrio chole...	275.0	[0..17]	[407..523]

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Predicted Domain #1

Region A:
Residues: [1-407]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRWFRALLKN ASLAGAPKYI EHFSKFSPSP LSMKQFLDFG SSNACEKTSF TFLRQELPVR  60
   61 LANIMKEINL LPDRVLSTPS VQLVQSWYVQ SLLDIMEFLD KDPEDHRTLS QFTDALVTIR 120
  121 NRHNDVVPTM AQGVLEYKDT YGDDPVSNQN IQYFLDRFYL SRISIRMLIN QHTLIFDGST 180
  181 NPAHPKHIGS IDPNCSVSDV VKDAYDMAKL LCDKYYMASP DLEIQEVNAT NATQPIHMVY 240
  241 VPSHLYHMLF ELFKNAMRAT VESHESSLTL PPIKIMVALG EEDLSIKMSD RGGGVPLRKI 300
  301 ERLFSYMYST APTPQPGTGG TPLAGFGYGL PISRLYAKYF QGDLQLFSME GFGTDAVIYL 360
  361 KALSTDSVER LPVYNKSAWR HYQTIQEAGD WCVPSTEPKN TSTYRVS

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	64.522879
Match:	1jm6A
Description:	Pyruvate dehydrogenase kinase
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits