YRC Public Data Repository - Protein Structure Prediction

Protein:	CALCA_RAT
Organism:	Rattus norvegicus
Length:	128 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CALCA_RAT.

Description	E-value	Query Range	Subject Range
CALCA - calcitonin-related polypeptide alpha	202.0	[0..1]	[128..1]
gi\|109107198 - gi\|109107198\|ref\|XP_001092199.1\| PREDICTED: calcitonin-related polypeptide, beta [Macaca mulatta]	202.0	[0..1]	[128..1]
gi\|114636335 - gi\|114636335\|ref\|XP_529390.2\| PREDICTED: similar to Calcitonin gene-related peptide 2 precursor (Cal...	196.0	[0..1]	[128..12]
CALCA_CHICK - Calcitonin gene-related peptide OS=Gallus gallus GN=CALCA PE=2 SV=2	188.0	[0..1]	[127..1]
gi\|116062123, gi... - gi\|157278525\|ref\|NP_001098364.1\| calcitonin gene-related peptide 2 [Oryzias latipes], gi\|116062123\|d...	186.0	[0..1]	[127..1]
CRSP3_PIG - Calcitonin receptor-stimulating peptide 3 OS=Sus scrofa GN=CRSP3 PE=2 SV=1	186.0	[0..1]	[128..1]
gi\|19772948 - gi\|19772948\|emb\|CAC81277.1\| calcitonin gene related peptide [Takifugu rubripes]	185.0	[0..1]	[127..1]
CRSP1_CANLF - Calcitonin receptor-stimulating peptide 1 OS=Canis lupus familiaris GN=CRSP1 PE=2 SV=1	182.0	[0..1]	[128..1]

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Predicted Domain #1

Region A:
Residues: [1-128]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGFLKFSPFL VVSILLLYQA CGLQAVPLRS TLESSPGMAA TLSEEEARLL LAALVQNYMQ  60
   61 MKVRELEQEQ EAEGSSVTAQ KRSCNTATCV THRLAGLLSR SGGVVKDNFV PTNVGSEAFG 120
  121 RRRRDLQA

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits