YRC Public Data Repository - Protein Structure Prediction

Protein:	TFF1_RAT
Organism:	Rattus norvegicus
Length:	81 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for TFF1_RAT.

Description	E-value	Query Range	Subject Range
gi\|61365084, gi\|... - gi\|61365084\|gb\|AAX42651.1\| trefoil factor 1 [synthetic construct], gi\|60824999\|gb\|AAX36702.1\| trefoi...	89.0	[0..1]	[81..4]
gi\|73978822 - gi\|73978822\|ref\|XP_532746.2\| PREDICTED: similar to Maltase-glucoamylase, intestinal [Canis familiari...	89.0	[0..9]	[79..137]
gi\|60812844, gi\|... - gi\|61354921\|gb\|AAX41076.1\| trefoil factor 1 [synthetic construct], gi\|60812844\|gb\|AAX36234.1\| trefoi... TFF1 - trefoil factor 1 HGNC:11755\|MIM:1... - factor 1	89.0	[0..1]	[81..4]
ZP4_PIG - Zona pellucida sperm-binding protein 4 OS=Sus scrofa GN=ZP4 PE=1 SV=1 gi\|479966 - pir\|\|S35712 sperm-binding glycoprotein ZP3-alpha precursor - pig	86.0	[0..6]	[81..129]
gi\|50727979 - gi\|50727979\|ref\|XP_415935.1\| PREDICTED: similar to Maltase-glucoamylase, intestinal [Gallus gallus]	86.0	[0..3]	[73..8]
gi\|109068509 - gi\|109068509\|ref\|XP_001083672.1\| PREDICTED: maltase-glucoamylase, partial [Macaca mulatta]	85.0	[0..13]	[78..85]
ZP4_RAT - Zona pellucida sperm-binding protein 4 OS=Rattus norvegicus GN=Zp4 PE=2 SV=1	85.0	[0..7]	[81..133]
gi\|31982355, gi\|... - gi\|31982355\|ref\|NP_032090.2\| acid alpha-glucosidase [Mus musculus], gi\|16307343\|gb\|AAH10210.1\| Gluco...	84.0	[0..17]	[78..71]

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Predicted Domain #1

Region A:
Residues: [1-81]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEHKVTCVLA MVLMLALSSL AQNQEETCAV IPRERINCGF PGVTAQQCKE KGCCFDDSVR  60
   61 GFPWCFRPLV IENQQEEECP F

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	13.69897
Match:	1pcpA
Description:	SOLUTION STRUCTURE OF A TREFOIL-MOTIF-CONTAINING CELL GROWTH FACTOR, PORCINE SPASMOLYTIC PROTEIN
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
binding	1.30259381288946	bayes_pls_golite062009
protein binding	0.524855475418758	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: