YRC Public Data Repository - Protein Structure Prediction

Protein:	STMN1_RAT
Organism:	Rattus norvegicus
Length:	149 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for STMN1_RAT.

Description	E-value	Query Range	Subject Range
gi\|108999807 - gi\|108999807\|ref\|XP_001114361.1\| PREDICTED: similar to Stathmin (Phosphoprotein p19) (pp19) (Oncopro...	162.0	[0..1]	[149..260]
gi\|50745196 - gi\|50745196\|ref\|XP_420017.1\| PREDICTED: similar to Stathmin 4 (Stathmin-like protein B3) (RB3) [Gall...	151.0	[0..3]	[145..150]
gi\|73992751 - gi\|73992751\|ref\|XP_534480.2\| PREDICTED: similar to Stathmin 3 (SCG10-like protein) (SCG10-related pr...	122.0	[0..5]	[144..143]
gi\|57043260, gi\|... - gi\|73950168\|ref\|XP_866126.1\| PREDICTED: similar to Stathmin (Phosphoprotein p19) (pp19) (Oncoprotein... STMN1_MACFA - Stathmin OS=Macaca fascicularis GN=STMN1 PE=2 SV=1 gi\|223973111 - gi\|223973111\|gb\|ACN30743.1\| unknown [Zea mays] ENSCJAT00000018368 - null tr\|M3WVG9\|M3WVG9... - Stathmin OS=Felis catus GN=STMN1 PE=3 SV=1 STMN1_PIG - Stathmin OS=Sus scrofa GN=STMN1 PE=2 SV=3 STMN1_BOVIN - Stathmin OS=Bos taurus GN=STMN1 PE=2 SV=3 gi\|208967498 - gi\|208967498\|dbj\|BAG73763.1\| stathmin 1/oncoprotein 18 [synthetic construct] gi\|55586549, gi\|... - gi\|55586549\|ref\|XP_513222.1\| PREDICTED: stathmin 1 isoform 8 [Pan troglodytes], gi\|114554818\|ref\|XP_... STMN1_GECJA - Stathmin OS=Gecko japonicus GN=STMN1 PE=2 SV=1 STMN1 - stathmin 1 gi\|149694232 - gi\|149694232\|ref\|XP_001504164.1\| PREDICTED: similar to Stathmin (Phosphoprotein p19) (pp19) (Oncopro...	117.0	[0..1]	[149..1]
gi\|12850583 - gi\|12850583\|dbj\|BAB28778.1\| unnamed protein product [Mus musculus]	117.0	[0..1]	[149..1]
gi\|60654325 - gi\|60654325\|gb\|AAX29853.1\| stathmin 1/oncoprotein 18 [synthetic construct]	116.0	[0..1]	[149..1]

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Predicted Domain #1

Region A:
Residues: [1-149]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASSDIQVKE LEKRASGQAF ELILSPRSKE SVPEFPLSPP KKKDLSLEEI QKKLEAAEER  60
   61 RKSHEAEVLK QLAEKREHEK EVLQKAIEEN NNFSKMAEEK LTHKMEANKE NREAQMAAKL 120
  121 ERLREKDKHV EEVRKNKESK DPADETEAD

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	24.39794
Match:	1sa1E
Description:	TUBULIN-PODOPHYLLOTOXIN: STATHMIN-LIKE DOMAIN COMPLEX
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
tubulin binding	3.65496915008945	bayes_pls_golite062009
cytoskeletal protein binding	2.89666448608274	bayes_pls_golite062009
microtubule binding	2.64117962157109	bayes_pls_golite062009
protein binding	2.51615225301602	bayes_pls_golite062009
binding	2.01491607652085	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: