YRC Public Data Repository - Protein Structure Prediction

Protein:	RPC9_RAT
Organism:	Rattus norvegicus
Length:	148 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RPC9_RAT.

Description	E-value	Query Range	Subject Range
gi\|76653291 - gi\|76653291\|ref\|XP_584162.2\| PREDICTED: similar to Calcitonin gene-related peptide-receptor componen...	186.0	[0..1]	[148..66]
gi\|55628662 - gi\|55628662\|ref\|XP_519126.1\| PREDICTED: calcitonin gene-related peptide-receptor component protein i... CRCP - CGRP receptor component	157.0	[0..1]	[148..1]
gi\|73957611 - gi\|73957611\|ref\|XP_536833.2\| PREDICTED: similar to Calcitonin gene-related peptide-receptor componen...	153.0	[0..1]	[148..1]
RPC9_MOUSE - DNA-directed RNA polymerase III subunit RPC9 OS=Mus musculus GN=Crcp PE=2 SV=1	153.0	[0..1]	[148..1]
gi\|50751915 - gi\|50751915\|ref\|XP_422576.1\| PREDICTED: similar to RIKEN cDNA 2610028L19 [Gallus gallus]	147.0	[0..6]	[122..244]
gi\|47221798 - gi\|47221798\|emb\|CAG08852.1\| unnamed protein product [Tetraodon nigroviridis]	143.0	[0..1]	[146..1]
RPC9_CAVPO - DNA-directed RNA polymerase III subunit RPC9 OS=Cavia porcellus GN=CRCP PE=2 SV=1	143.0	[0..1]	[148..1]
CE01606 - WBGene00010911 Zinc-binding dehydrogenases status:Partially_confirmed TR:Q09593 protein_id:CAA87050....	139.0	[0..1]	[129..402]

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Predicted Domain #1

Region A:
Residues: [1-148]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEVKDANAAL LSNYEVFQLL TDLKEQRKES GKNKHSAGQQ NLNAITYETL KYISKTPCKN  60
   61 QSPAIVQEFL TAMKSHKLTK AEKLQLLNHR PMTAVEIQLM VEESEERLTE EQIEALLHTV 120
  121 TSILPAGPED EQSKSTSNDA AMEEEEPA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	27.045757
Match:	2c35A
Description:	Subunits Rpb4 and Rpb7 of human RNA polymerase II
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits