YRC Public Data Repository - Protein Structure Prediction

Protein:	APOC3_RAT
Organism:	Rattus norvegicus
Length:	101 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for APOC3_RAT.

Description	E-value	Query Range	Subject Range
gi\|91990, gi\|149... - gi\|91990\|pir\|\|B24700 apolipoprotein C-III precursor - rat, gi\|149041554\|gb\|EDL95395.1\| apolipoprotei...	148.0	[0..1]	[101..1]
APOC3_MACFA - Apolipoprotein C-III OS=Macaca fascicularis GN=APOC3 PE=1 SV=2	138.0	[0..1]	[95..1]
gi\|12842337, gi\|... - gi\|15421856\|ref\|NP_075603.1\| apolipoprotein C-III [Mus musculus], gi\|12842337\|dbj\|BAB25563.1\| unname...	138.0	[0..1]	[100..1]
gi\|109108764 - gi\|109108764\|ref\|XP_001090312.1\| PREDICTED: similar to Apolipoprotein C-III precursor (Apo-CIII) (Ap...	136.0	[0..1]	[95..1]
APOC3_PIG - Apolipoprotein C-III OS=Sus scrofa GN=APOC3 PE=1 SV=2 gi\|423202 - pir\|\|B46018 apolipoprotein C-III - pig	132.0	[0..1]	[96..1]
gi\|123982458, gi... - gi\|123997125\|gb\|ABM86164.1\| apolipoprotein C-III [synthetic construct], gi\|123982458\|gb\|ABM82970.1\| ... APOC3 - apolipoprotein C-III	128.0	[0..1]	[96..1]
APOC3_CANLF - Apolipoprotein C-III OS=Canis lupus familiaris GN=APOC3 PE=2 SV=1	126.0	[0..1]	[95..1]

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Predicted Domain #1

Region A:
Residues: [1-101]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQPRMLLIVA LVALLASARA DEGEGSLLLG SMQGYMEQAS KTVQDALSSM QESDIAVVAS  60
   61 RGWMDNRFKS LKGYWSKFTD KFTGLWESGP EDQLTTPTLE P

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	69.677781
Match:	PF05778.3
Description:	No description for PF05778.3 was found.

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.737	N/A	N/A	a.16.1	S15/NS1 RNA-binding domain
View	Download	0.727	N/A	N/A	a.7.12	Description not found.
View	Download	0.714	N/A	N/A	a.1.1	Globin-like
View	Download	0.705	N/A	N/A	a.24.3	Cytochromes
View	Download	0.691	N/A	N/A	a.292.1	Description not found.
View	Download	0.641	N/A	N/A	a.25.1	Ferritin-like
View	Download	0.629	N/A	N/A	a.77.1	DEATH domain
View	Download	0.622	N/A	N/A	a.130.1	Chorismate mutase II
View	Download	0.558	N/A	N/A	a.100.1	6-phosphogluconate dehydrogenase C-terminal domain-like
View	Download	0.535	N/A	N/A	a.23.1	HSC20 (HSCB), C-terminal oligomerisation domain
View	Download	0.475	N/A	N/A	a.231.1	Description not found.
View	Download	0.429	N/A	N/A	a.16.1	S15/NS1 RNA-binding domain

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits