YRC Public Data Repository - Protein Structure Prediction

Protein:	STP1_RAT
Organism:	Rattus norvegicus
Length:	55 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for STP1_RAT.

Description	E-value	Query Range	Subject Range
gi\|2140 - gi\|2140\|emb\|CAA34292.1\| transition protein 1 [Sus sp.] gi\|2144748 - pir\|\|BGPG spermatid transition protein 1 - pig STP1_PIG - Spermatid nuclear transition protein 1 OS=Sus scrofa GN=TNP1 PE=1 SV=2	65.0	[0..1]	[55..1]
STP1_PIG - (P17306) Spermatid nuclear transition protein 1 (STP-1) (TP-1) gi\|688356 - gi\|688356\|gb\|AAB31192.1\| transition protein 1, TP1 [boars, testes, Peptide, 54 aa]	64.0	[0..2]	[55..1]
STP1_MOUSE - Spermatid nuclear transition protein 1 OS=Mus musculus GN=Tnp1 PE=2 SV=2 gi\|8493596 - gi\|8493596\|gb\|AAB21244.2\| transition protein 1; TP1 [Mus sp.]	63.0	[0..1]	[55..1]
STP1_BOVIN - Spermatid nuclear transition protein 1 OS=Bos taurus GN=TNP1 PE=2 SV=2	63.0	[0..1]	[55..1]
gi\|109100944 - gi\|109100944\|ref\|XP_001087783.1\| PREDICTED: transition protein 1 (during histone to protamine replac... TNP1 - transition protein 1 (during histone to protamine replacement) CCDS2406.1_1 - null	63.0	[0..1]	[55..1]
STP1_SHEEP - Spermatid nuclear transition protein 1 OS=Ovis aries GN=TNP1 PE=1 SV=1	62.0	[0..2]	[55..1]
gi\|86211463, gi\|... - gi\|86211473\|gb\|ABC87358.1\| transition protein 1 [Capra nubiana], gi\|86211471\|gb\|ABC87357.1\| transiti... gi\|86211477, gi\|... - gi\|86211477\|gb\|ABC87360.1\| transition protein 1 [Capra sibirica], gi\|86211475\|gb\|ABC87359.1\| transit... gi\|86211479 - gi\|86211479\|gb\|ABC87361.1\| transition protein 1 [Capra pyrenaica] gi\|86211455, gi\|... - gi\|86211455\|gb\|ABC87349.1\| transition protein 1 [Capra caucasica], gi\|86211453\|gb\|ABC87348.1\| transi... gi\|86211457 - gi\|86211457\|gb\|ABC87350.1\| transition protein 1 [Capra cylindricornis] gi\|86211461 - gi\|86211461\|gb\|ABC87352.1\| transition protein 1 [Capra ibex ibex]	56.0	[0..10]	[55..1]
gi\|86211459 - gi\|86211459\|gb\|ABC87351.1\| transition protein 1 [Capra cylindricornis]	55.0	[0..10]	[55..1]

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Predicted Domain #1

Region A:
Residues: [1-55]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSTSRKLKTH GMRRGKNRAP HKGVKRGGSK RKYRKSSLKS RKRGDDASRN YRSHL

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	35.30103
Match:	PF02079.7
Description:	No description for PF02079.7 was found.

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.285	N/A	N/A	a.4.5	"Winged helix" DNA-binding domain
View	Download	0.235	N/A	N/A	a.108.1	Ribosomal protein L7/12, oligomerisation (N-terminal) domain
View	Download	0.231	N/A	N/A	a.4.5	"Winged helix" DNA-binding domain
View	Download	0.230	N/A	N/A	a.8.1	Bacterial immunoglobulin/albumin-binding domains
View	Download	0.216	N/A	N/A	a.159.2	FF domain
View	Download	0.210	N/A	N/A	a.4.7	Ribosomal protein L11, C-terminal domain
View	Download	0.205	N/A	N/A	a.60.3	C-terminal domain of RNA polymerase alpha subunit
View	Download	0.205	N/A	N/A	a.60.3	C-terminal domain of RNA polymerase alpha subunit

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits