YRC Public Data Repository - Protein Structure Prediction

Protein:	NPFF_RAT
Organism:	Rattus norvegicus
Length:	114 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for NPFF_RAT.

Description	E-value	Query Range	Subject Range
NPFF_MOUSE - Pro-FMRFamide-related neuropeptide FF OS=Mus musculus GN=Npff PE=3 SV=1	167.0	[0..1]	[114..1]
gi\|109096952 - gi\|109096952\|ref\|XP_001106733.1\| PREDICTED: similar to neuropeptide FF-amide peptide precursor isofo...	145.0	[0..1]	[114..1]
gi\|114644472 - gi\|114644472\|ref\|XP_001138078.1\| PREDICTED: neuropeptide FF-amide peptide isoform 1 [Pan troglodytes...	136.0	[0..1]	[114..1]
NPFF - neuropeptide FF-amide peptide precursor	135.0	[0..1]	[114..1]
NPFF_BOVIN - Pro-FMRFamide-related neuropeptide FF OS=Bos taurus GN=NPFF PE=3 SV=1	130.0	[0..17]	[114..18]
gi\|114052450, gi... - gi\|116078056\|dbj\|BAF34891.1\| neuropeptide NPFF [Danio rerio], gi\|114052450\|ref\|NP_899189.2\| neuropep...	126.0	[0..5]	[114..6]

Back

Predicted Domain #1

Region A:
Residues: [1-114]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDSKWAAVLL LLLLLRNWGH AEEAGSWGED QVFAEEDKGP HPSQYAHTPD RIQTPGSLMR  60
   61 VLLQAMERPR RNPAFLFQPQ RFGRNAWGPW SKEQLSPQAR EFWSLAAPQR FGKK

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits