YRC Public Data Repository - Protein Structure Prediction

Protein:	NPB_RAT
Organism:	Rattus norvegicus
Length:	119 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for NPB_RAT.

Description	E-value	Query Range	Subject Range
gi\|47223854 - gi\|47223854\|emb\|CAG06031.1\| unnamed protein product [Tetraodon nigroviridis]	183.0	[0..6]	[119..8]
NPB_MOUSE - Neuropeptide B OS=Mus musculus GN=Npb PE=1 SV=1	173.0	[0..1]	[118..1]
gi\|188219655, gi... - gi\|68441949\|ref\|XP_692220.1\| PREDICTED: hypothetical protein [Danio rerio], gi\|188219655\|ref\|NP_0011...	163.0	[0..7]	[116..9]
NPB_BOVIN - Neuropeptide B OS=Bos taurus GN=NPB PE=1 SV=1	160.0	[0..17]	[117..20]
gi\|109119139 - gi\|109119139\|ref\|XP_001112472.1\| PREDICTED: similar to preproneuropeptide B [Macaca mulatta]	153.0	[0..17]	[118..20]
NPB - neuropeptide B	153.0	[0..17]	[119..20]
gi\|73964738 - gi\|73964738\|ref\|XP_849890.1\| PREDICTED: similar to preproneuropeptide B [Canis familiaris]	88.0	[0..66]	[119..5]

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Predicted Domain #1

Region A:
Residues: [1-119]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVRCRTLVAA ALALLLTPAL AWYKPAAGSH HYSVGRAAGL LSSFHRFPST RRSESPALRV  60
   61 GTVPLRNLEM RPSVRSLALC VKDVTPNLQS CQRQLNSRGT FQCKADVFLS LHKAECQSA

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

		MCM Score	SCOP Match	SCOP Description
View	Download	0.835	a.100.1	6-phosphogluconate dehydrogenase C-terminal domain-like

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits