YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|157823787, gi...
Organism:	Rattus norvegicus
Length:	359 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|157823787, gi....

Description	E-value	Query Range	Subject Range
MB211_DANRE - Protein mab-21-like 1 OS=Danio rerio GN=mab21l1 PE=2 SV=1	0.0	[1..359]	[1..359]
gi\|47227852 - gi\|47227852\|emb\|CAG09015.1\| unnamed protein product [Tetraodon nigroviridis]	0.0	[1..359]	[1..359]
gi\|48146957 - gi\|48146957\|emb\|CAG33701.1\| MAB21L1 [Homo sapiens]	0.0	[1..359]	[1..359]
gi\|224049331 - gi\|224049331\|ref\|XP_002186952.1\| PREDICTED: similar to mab-21-like 2 [Taeniopygia guttata] tr\|M3X8D1\|M3X8D1... - Mab-21 like 2 OS=Felis catus GN=MAB21L2 PE=4 SV=1 gi\|57097275 - gi\|57097275\|ref\|XP_539761.1\| PREDICTED: similar to mab-21-like 2 isoform 1 [Canis familiaris] MB212_MOUSE - Protein mab-21-like 2 OS=Mus musculus GN=Mab21l2 PE=2 SV=1 gi\|61821253 - gi\|61821253\|ref\|XP_585738.1\| PREDICTED: similar to mab-21-like 2 isoform 1 [Bos taurus] gi\|149698169 - gi\|149698169\|ref\|XP_001501615.1\| PREDICTED: similar to mab-21-like 2 [Equus caballus] gi\|149640453 - gi\|149640453\|ref\|XP_001513820.1\| PREDICTED: hypothetical protein [Ornithorhynchus anatinus] gi\|126331311 - gi\|126331311\|ref\|XP_001366703.1\| PREDICTED: hypothetical protein [Monodelphis domestica] gi\|27693879, gi\|... - ref\|XP_227492.1\| similar to mab-21-like protein 2; mab-21-like 2 [Rattus norvegicus], gi\|157820693\|...	0.0	[1..359]	[1..359]
MB211_XENTR - Protein mab-21-like 1 OS=Xenopus tropicalis GN=mab21l1 PE=2 SV=1	0.0	[1..359]	[1..359]

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Predicted Domain #1

Region A:
Residues: [1-359]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIAAQAKLVY HLNKYYNEKC QARKAAIAKT IREVCKVVSD VLKEVEVQEP RFISSLNEMD  60
   61 NRYEGLEVIS PTEFEVVLYL NQMGVFNFVD DGSLPGCAVL KLSDGRKRSM SLWVEFITAS 120
  121 GYLSARKIRS RFQTLVAQAV DKCSYRDVVK MVADTSEVKL RIRDRYVVQI TPAFKCTGIW 180
  181 PRSAAHWPLP HIPWPGPNRV AEVKAEGFNL LSKECHSLAG KQSSAESDAW VLQFAEAENR 240
  241 LQMGGCRKKC LSILKTLRDR HLELPGQPLN NYHMKTLVSY ECEKHPRESD WDESCLGDRL 300
  301 NGILLQLISC LQCRRCPHYF LPNLDLFQGK PHSALENAAK QTWRLAREIL TNPKSLEKL

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.4
Match:	1px5A
Description:	Crystal structure of the 2'-specific and double-stranded RNA-activated interferon-induced antiviral protein 2'-5'-oligoadenylate synthetase
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
binding	1.53356592031109	bayes_pls_golite062009
protein binding	1.20472171285911	bayes_pls_golite062009
transferase activity, transferring phosphorus-containing groups	0.893478989935841	bayes_pls_golite062009
nucleic acid binding	0.766163328557144	bayes_pls_golite062009
nucleotidyltransferase activity	0.378944807711308	bayes_pls_golite062009
DNA binding	0.294396132196589	bayes_pls_golite062009
transcription factor binding	0.0365937361646029	bayes_pls_golite062009
transferase activity	0.02609645275331	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: