YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|117622710, gi...
Organism:	Escherichia coli APEC O1
Length:	158 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|117622710, gi....

Description	E-value	Query Range	Subject Range
gi\|1773134 - gi\|1773134\|gb\|AAB40206.1\| glutamine synthetase activity regulation protein [Escherichia coli]	259.0	[0..1]	[158..1]
gi\|69936462, gi\|... - gi\|69936462\|ref\|ZP_00631288.1\| Nitrogen regulatory protein P-II [Paracoccus denitrificans PD1222], g...	210.0	[0..15]	[158..581]
gi\|37680932, gi\|... - gi\|37680932\|ref\|NP_935541.1\| nitrogen regulatory protein PII [Vibrio vulnificus YJ016], gi\|37199682\|...	206.0	[0..24]	[158..1]
gi\|114327623, gi... - gi\|114327623\|ref\|YP_744780.1\| nitrogen regulatory protein P-II [Granulibacter bethesdensis CGDNIH1],...	200.0	[0..9]	[158..34]
gi\|3885941 - gi\|3885941\|gb\|AAC78332.1\| PII protein [Ricinus communis]	200.0	[0..7]	[157..25]
gi\|118709863, gi... - gi\|118709863\|ref\|ZP_01562443.1\| nitrogen regulatory protein P-II [Burkholderia cenocepacia MC0-3], g... gi\|116648975, gi... - gi\|67667319\|ref\|ZP_00464545.1\| Nitrogen regulatory protein P-II [Burkholderia cenocepacia HI2424], g... gi\|67659096, gi\|... - gi\|67659096\|ref\|ZP_00456462.1\| Nitrogen regulatory protein P-II [Burkholderia cenocepacia AU 1054], ...	195.0	[0..42]	[158..20]
gi\|27361166, gi\|... - gi\|27365020\|ref\|NP_760548.1\| nitrogen regulatory protein P-II [Vibrio vulnificus CMCP6], gi\|27361166...	194.0	[0..39]	[158..1]
gi\|15640627, gi\|... - gi\|9655039\|gb\|AAF93773.1\| nitrogen regulatory protein P-II [Vibrio cholerae O1 biovar El Tor str. N1... gi\|11278105 - pir\|\|B82302 nitrogen regulatory protein P-II [similarity] - Vibrio cholerae (strain N16961 serogroup... gi\|254850838, gi... - gi\|254850838\|ref\|ZP_05240188.1\| nitrogen regulatory protein P-II [Vibrio cholerae MO10], gi\|25484654... gi\|125620606, gi... - gi\|254226855\|ref\|ZP_04920425.1\| nitrogen regulatory protein P-II [Vibrio cholerae V51], gi\|225354466... gi\|149740618, gi... - gi\|153825681\|ref\|ZP_01978348.1\| nitrogen regulatory protein P-II [Vibrio cholerae MZO-2], gi\|1497406... gi\|147675413, gi... - gi\|227116981\|ref\|YP_002818877.1\| nitrogen regulatory protein P-II [Vibrio cholerae O395], gi\|2270124... gi\|227080787, gi... - gi\|227080787\|ref\|YP_002809338.1\| nitrogen regulatory protein P-II [Vibrio cholerae M66-2], gi\|227008... gi\|150422820, gi... - gi\|254291256\|ref\|ZP_04962051.1\| nitrogen regulatory protein P-II [Vibrio cholerae AM-19226], gi\|1977... gi\|229519594, gi... - gi\|229519594\|ref\|ZP_04409037.1\| nitrogen regulatory protein P-II [Vibrio cholerae RC9], gi\|229344283... gi\|229512869, gi... - gi\|229512869\|ref\|ZP_04402336.1\| nitrogen regulatory protein P-II [Vibrio cholerae TMA 21], gi\|229350... gi\|229353768, gi... - gi\|229509196\|ref\|ZP_04398681.1\| nitrogen regulatory protein P-II [Vibrio cholerae B33], gi\|229353768... gi\|229505770, gi... - gi\|229505770\|ref\|ZP_04395280.1\| nitrogen regulatory protein P-II [Vibrio cholerae BX 330286], gi\|229... gi\|229371536, gi... - gi\|229608881\|ref\|YP_002879529.1\| nitrogen regulatory protein P-II [Vibrio cholerae MJ-1236], gi\|2293... gi\|229530413, gi... - gi\|229530413\|ref\|ZP_04419801.1\| nitrogen regulatory protein P-II [Vibrio cholerae 12129(1)], gi\|2293... gi\|229338841, gi... - gi\|229525260\|ref\|ZP_04414665.1\| nitrogen regulatory protein P-II [Vibrio cholerae bv. albensis VL426... gi\|229342129, gi... - gi\|229520896\|ref\|ZP_04410318.1\| nitrogen regulatory protein P-II [Vibrio cholerae TM 11079-80], gi\|2...	193.0	[0..39]	[158..2]
gi\|83309794, gi\|... - gi\|83309794\|ref\|YP_420058.1\| nitrogen regulatory protein PII [Magnetospirillum magneticum AMB-1], gi...	193.0	[0..40]	[158..8]
gi\|15156872, gi\|... - gi\|15889072\|ref\|NP_354753.1\| hypothetical protein AGR_C_3252 [Agrobacterium tumefaciens str. C58], g... gi\|25301256 - pir\|\|A97573 nitrogen regulatory protein p-II [imported] - Agrobacterium tumefaciens (strain C58, Cer...	193.0	[0..40]	[158..39]

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Predicted Domain #1

Region A:
Residues: [1-158]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MHCHSAFSFS IFLTSCSLSR FSFLAHRLQY LLRVAEPLPN SDRRGSMKLV TVIIKPFKLE  60
   61 DVREALSSIG IQGLTVTEVK GFGRQKGHAE LYRGAEYSVN FLPKVKIDVA IADDQLDEVI 120
  121 DIVSKAAYTG KIGDGKIFVA ELQRVIRIRT GEADEAAL

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	45.30103
Match:	2ns1B
Description:	No description for 2ns1B was found.

Predicted functions:

Term	Confidence	Notes
transcription regulator activity	1.84048896890546	bayes_pls_golite062009
binding	0.304100025288714	bayes_pls_golite062009
catalytic activity	0.258697307111435	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: