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View Structure Prediction Details

Protein: gi|125546407
Organism: Oryza sativa Indica Group
Length: 509 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|125546407.

Description E-value Query
Range
Subject
Range
gi|62321654 - gi|62321654|dbj|BAD95273.1| poly(ADP-ribose) like glycohydrolase [Arabidopsis thaliana]
569.0 [0..1] [496..1]

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Predicted Domain #1
Region A:
Residues: [1-169]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEARGDLRSI LPYLPVVLRG GALFWPPAAQ EALKALALGP DVSRVSSGDV LADALTDLRL  60
   61 ALNLDPLPRR AAEGFALFFD DLLSRAQARD WFDHVAPSLA RLLLRLPTLL EGHYRAAGDE 120
  121 ARGLRILSSQ DAGLVLLSQE LAAALLACAL FCLFPTADRA EACLPAINF

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [170-317]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DSLFAALCYN SRQSQEQKVR CLVHYFDRVT ASTPTGSVSF ERKVLPRRPE SDGITYPDMD  60
   61 TWMKSGVPLC TFRVFSSGLI EDEEQEALEV DFANRYLGGG ALSRGCVQEE IRFMINPELI 120
  121 VGMLFMVSME DNEAIEIVGA ERFSQYMG

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [318-384]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 YGSSFRFTGD YLDSKPFDAM GRRKTRIVAI DALDCPTRLQ FESSGLLREV NKAFCGFLDQ  60
   61 SNHQLCA

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #4
Region A:
Residues: [385-509]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KLVQDLNTKD NCPSVIPDEC IGVSTGNWGC GAFGGNPEIK SMIQWIAASQ ALRSFINYYT  60
   61 FESESLKRLE EVTQWILRHR WTVGELWDML VEYSSQRLRG DTNEGFLTWL LPKDIPNGDV 120
  121 DYMCE

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle