YRC Public Data Repository - Protein Structure Prediction

Protein:	OSTCN_RAT
Organism:	Rattus norvegicus
Length:	99 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for OSTCN_RAT.

Description	E-value	Query Range	Subject Range
gi\|89994012, gi\|... - gi\|90962984\|ref\|NP_001035098.1\| bone gamma-carboxyglutamate (gla) protein [Ovis aries], gi\|89994012\|...	132.0	[0..1]	[96..1]
gi\|29450 - gi\|29450\|emb\|CAA27763.1\| BGP [Homo sapiens]	118.0	[0..16]	[96..16]
gi\|46575806 - gi\|46575806\|dbj\|BAD16774.1\| osteocalcin [Rana catesbeiana]	117.0	[0..1]	[96..1]
OSTCN_SPAAU - Osteocalcin OS=Sparus aurata GN=bglap PE=1 SV=2	117.0	[0..1]	[96..1]
CCDS1134.1_1 - null OSTCN_MACNE - Osteocalcin OS=Macaca nemestrina GN=BGLAP PE=3 SV=1 OSTCN_MACMU - Osteocalcin OS=Macaca mulatta GN=BGLAP PE=3 SV=1 OSTCN_ATEGE - Osteocalcin OS=Ateles geoffroyi GN=BGLAP PE=3 SV=1	115.0	[0..16]	[96..16]
gi\|58286828 - gi\|58286828\|gb\|AAV80233.1\| osteocalcin [Dicentrarchus labrax]	114.0	[0..1]	[96..1]
OSTCN_ARGRE - Osteocalcin OS=Argyrosomus regius GN=bglap PE=1 SV=1	113.0	[0..1]	[96..1]
gi\|37729652, gi\|... - gi\|37729652\|gb\|AAO53254.1\| osteocalcin [Danio rerio], gi\|139949243\|ref\|NP_001077326.1\| hypothetical ...	112.0	[0..1]	[96..1]
OSTCN_BOVIN - Osteocalcin OS=Bos taurus GN=BGLAP PE=1 SV=2	112.0	[0..19]	[96..19]

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Predicted Domain #1

Region A:
Residues: [1-99]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRTLSLLTLL ALTAFCLSDL AGAKPSDSES DKAFMSKQEG SKVVNRLRRY LNNGLGAPAP  60
   61 YPDPLEPHRE VCELNPNCDE LADHIGFQDA YKRIYGTTV

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits