YRC Public Data Repository - Protein Structure Prediction

Protein:	OSTCN_RAT
Organism:	Rattus norvegicus
Length:	99 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for OSTCN_RAT.

Description	E-value	Query Range	Subject Range
gi\|89994012, gi\|... - gi\|90962984\|ref\|NP_001035098.1\| bone gamma-carboxyglutamate (gla) protein [Ovis aries], gi\|89994012\|...	132.0	[0..1]	[96..1]
gi\|29450 - gi\|29450\|emb\|CAA27763.1\| BGP [Homo sapiens]	118.0	[0..16]	[96..16]
gi\|46575806 - gi\|46575806\|dbj\|BAD16774.1\| osteocalcin [Rana catesbeiana]	117.0	[0..1]	[96..1]
OSTCN_SPAAU - Osteocalcin OS=Sparus aurata GN=bglap PE=1 SV=2	117.0	[0..1]	[96..1]
CCDS1134.1_1 - null OSTCN_MACNE - Osteocalcin OS=Macaca nemestrina GN=BGLAP PE=3 SV=1 OSTCN_MACMU - Osteocalcin OS=Macaca mulatta GN=BGLAP PE=3 SV=1 OSTCN_ATEGE - Osteocalcin OS=Ateles geoffroyi GN=BGLAP PE=3 SV=1	115.0	[0..16]	[96..16]
gi\|58286828 - gi\|58286828\|gb\|AAV80233.1\| osteocalcin [Dicentrarchus labrax]	114.0	[0..1]	[96..1]
OSTCN_ARGRE - Osteocalcin OS=Argyrosomus regius GN=bglap PE=1 SV=1	113.0	[0..1]	[96..1]
gi\|37729652, gi\|... - gi\|37729652\|gb\|AAO53254.1\| osteocalcin [Danio rerio], gi\|139949243\|ref\|NP_001077326.1\| hypothetical ...	112.0	[0..1]	[96..1]
OSTCN_BOVIN - Osteocalcin OS=Bos taurus GN=BGLAP PE=1 SV=2	112.0	[0..19]	[96..19]

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Predicted Domain #1

Region A:
Residues: [1-99]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRTLSLLTLL ALTAFCLSDL AGAKPSDSES DKAFMSKQEG SKVVNRLRRY LNNGLGAPAP  60
   61 YPDPLEPHRE VCELNPNCDE LADHIGFQDA YKRIYGTTV

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

		MCM Score	SCOP Match	SCOP Description
View	Download	0.723	a.60.9	lambda integrase-like, N-terminal domain
View	Download	0.466	a.100.1	6-phosphogluconate dehydrogenase C-terminal domain-like
View	Download	0.466	a.100.1	6-phosphogluconate dehydrogenase C-terminal domain-like
View	Download	0.422	a.60.9	lambda integrase-like, N-terminal domain
View	Download	0.406	d.68.6	DNA-binding protein Sso10b (AlbA)
View	Download	0.344	d.52.7	Ribosome-binding factor A, RbfA
View	Download	0.341	a.61.1	Retroviral matrix proteins
View	Download	0.307	f.1.4	Bcl-2 inhibitors of programmed cell death

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits