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View Structure Prediction Details

Protein: gi|116309905, gi...
Organism: Oryza sativa Indica Group
Length: 388 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|116309905, gi....

Description E-value Query
Range
Subject
Range
gi|4850383, gi|2... - gi|4850383|gb|AAD31053.1|AC007357_2 Contains similarity to gi|4417304 F15O11.7 putative beta-1,4-man...
609.0 [0..2] [387..3]

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Predicted Domain #1
Region A:
Residues: [1-105]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPETGPYGHK KTDGICDGVC GEPASKAVLT MSRLRCALRG FDFRALLALL IGVPILILMI  60
   61 YAHGQKVTYF LRPIWESPPK PFKTIPHYYH ENVTMAKLCK LHGWK

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [106-233]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 VRETPRRVFD AVLFSNELDI LEIRWNELSP YVSEFVLLES NSTFTGLKKP LHFKENRHRF  60
   61 GFAESRLTYG MIGGRFVKGE NPFVEESYQR VALDQLIKIA KIEDDDLLIM SDVDEIPSGH 120
  121 TIDLLRWC

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [234-388]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DDIPEILHLQ LRNYLYSFEF FLDDKSWRAS IHRYRSGKTR YAHFRQTDEL LADSGWHCSF  60
   61 CFRYISDFAF KMQAYSHVDR IRFKYFLNPE RIQDVICRGA DLFDMLPEEY TFQEIIAKLG 120
  121 PIPSTFSAVH LPSYLLQNVD RYRYLLPGYC RRESG

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle