YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|229509279, gi...
Organism:	Vibrio cholerae B33
Length:	196 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|229509279, gi....

Description	E-value	Query Range	Subject Range
gi\|1695686 - gi\|1695686\|dbj\|BAA12072.1\| pyruvate carboxylase [Geobacillus stearothermophilus]	131.0	[0..6]	[195..982]
gi\|56419614, gi\|... - gi\|56419614\|ref\|YP_146932.1\| pyruvate carboxylase [Geobacillus kaustophilus HTA426], gi\|56379456\|dbj...	130.0	[0..6]	[195..982]
gi\|83699281 - gi\|83699281\|dbj\|BAE54378.1\| pyruvate carboxylase biotin-containing subunit [Pelotomaculum thermoprop...	128.0	[0..28]	[196..467]
gi\|11272801 - pir\|\|T44608 pyruvate carboxylase (EC 6.4.1.1) [imported] - Bacillus cereus (fragment) gi\|4584148 - gi\|4584148\|emb\|CAB40604.1\| pyruvate carboxylase [Bacillus cereus ATCC 10987]	127.0	[0..6]	[196..819]
gi\|47557102, gi\|... - gi\|47565822\|ref\|ZP_00236861.1\| pyruvate carboxylase [Bacillus cereus G9241], gi\|47557102\|gb\|EAL15431...	126.0	[0..6]	[196..983]
gi\|89085703, gi\|... - gi\|89099550\|ref\|ZP_01172425.1\| pyruvate carboxylase [Bacillus sp. NRRL B-14911], gi\|89085703\|gb\|EAR6...	124.0	[0..6]	[195..987]
gi\|163863883, gi... - gi\|89206387\|ref\|ZP_01184946.1\| Pyruvate carboxylase [Bacillus weihenstephanensis KBAB4], gi\|89155649...	124.0	[0..6]	[196..983]
gi\|89202981, gi\|... - gi\|89202981\|ref\|ZP_01181683.1\| Pyruvate carboxylase [Bacillus cereus subsp. cytotoxis NVH 391-98], g...	123.0	[0..6]	[196..983]
gi\|49330018, gi\|... - gi\|49478462\|ref\|YP_038009.1\| pyruvate carboxylase [Bacillus thuringiensis serovar konkukian str. 97-...	123.0	[0..6]	[196..983]

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Predicted Domain #1

Region A:
Residues: [1-117]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRFRCPRLRI RFVCCNPSIA GQAIKTLCGP FGLSYSQDKR ERNMDIRKIK KLIELVEESG  60
   61 IAELEISEGE ESVRISRYGQ PAPAPQVHYA AAPAPVAAPA PVAQAAAVAE APAAAKV

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [118-196]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PAGHKVLSPM VGTFYRSPSP DAKAFIEVGQ SVSVGDTLCI VEAMKMMNQI EADKSGVVTA  60
   61 ILVEDGQTVE FDQPLVVIE

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	17.69897
Match:	1bdoA
Description:	STRUCTURE OF THE BIOTINYL DOMAIN OF ACETYL-COENZYME A CARBOXYLASE DETERMINED BY MAD PHASING
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
acetyl-CoA carboxylase activity	10.7856398099075	bayes_pls_golite062009
CoA carboxylase activity	10.0090741810507	bayes_pls_golite062009
ligase activity, forming carbon-carbon bonds	9.84466409837462	bayes_pls_golite062009
ligase activity	5.03219018024593	bayes_pls_golite062009
catalytic activity	1.39099902011318	bayes_pls_golite062009
dihydrolipoyllysine-residue acetyltransferase activity	0.77123283777817	bayes_pls_golite062009
S-acetyltransferase activity	0.62484336481352	bayes_pls_golite062009
dihydrolipoamide S-acyltransferase activity	0.61155119443764	bayes_pls_golite062009
S-acyltransferase activity	0.14278235106683	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: