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View Structure Prediction Details

Protein: CD59_RAT
Organism: Rattus norvegicus
Length: 126 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CD59_RAT.

Description E-value Query
Range		 Subject
Range
gi|114636912 - gi|114636912|ref|XP_001140212.1| PREDICTED: similar to precursor polypeptide (AA -25 to 103) [Pan tr...
 133.0 [0..1] [109..154]
gi|61361922, gi|... - gi|61361922|gb|AAX42127.1| CD59 antigen [synthetic construct], gi|61361917|gb|AAX42126.1| CD59 antig...
CD59 - CD59 molecule, complement regulatory protein
 128.0 [0..1] [120..1]
gi|60653791, gi|... - gi|60653793|gb|AAX29590.1| CD59 antigen p18-20 [synthetic construct], gi|60653791|gb|AAX29589.1| CD5...
 128.0 [0..1] [120..1]
CD59_PONAB - CD59 glycoprotein OS=Pongo abelii GN=CD59 PE=2 SV=1
CD59_PONPY - CD59 glycoprotein precursor - Pongo pygmaeus (Orangutan)
 127.0 [0..1] [120..1]
gi|90077478 - gi|90077478|dbj|BAE88419.1| unnamed protein product [Macaca fascicularis]
gi|109106850, gi... - gi|109106854|ref|XP_001083003.1| PREDICTED: similar to CD59 antigen p18-20 isoform 4 [Macaca mulatta...
 122.0 [0..1] [120..1]
CD59_MACFA - CD59 glycoprotein OS=Macaca fascicularis GN=CD59 PE=2 SV=1
 121.0 [0..1] [120..1]
CD59_AOTTR - CD59 glycoprotein OS=Aotus trivirgatus GN=CD59 PE=3 SV=1
 121.0 [0..1] [120..1]
CD59_SAISC - CD59 glycoprotein OS=Saimiri sciureus GN=CD59 PE=2 SV=1
 114.0 [0..1] [120..1]

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Predicted Domain #1
Region A:
Residues: [1-126] 
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRARRGFILL LLLAVLCSTG VSLRCYNCLD PVSSCKTNST CSPNLDACLV AVSGKQVYQQ  60
   61 CWRFSDCNAK FILSRLEIAN VQYRCCQADL CNKSFEDKPN NGAISLLGKT ALLVTSVLAA 120
  121 ILKPCF

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 17.154902
Match: 2j8bA
Description: No description for 2j8bA was found.

Predicted functions:

Term Confidence Notes
receptor activity 2.70083456904638 bayes_pls_golite062009
U-plasminogen activator receptor activity 2.67622889349209 bayes_pls_golite062009
signal transducer activity 2.48263944107373 bayes_pls_golite062009
molecular transducer activity 2.48263944107373 bayes_pls_golite062009
protein binding 2.27773193148456 bayes_pls_golite062009
receptor binding 1.96976025849754 bayes_pls_golite062009
binding 1.78861011884769 bayes_pls_golite062009
growth factor binding 1.43582806978958 bayes_pls_golite062009
cytokine binding 1.30600639196836 bayes_pls_golite062009
glycosaminoglycan binding 1.06543462237759 bayes_pls_golite062009
transforming growth factor beta binding 0.855590728274459 bayes_pls_golite062009
transforming growth factor beta receptor binding 0.58525546213471 bayes_pls_golite062009
transmembrane receptor protein serine/threonine kinase binding 0.58525546213471 bayes_pls_golite062009
polysaccharide binding 0.576570656707929 bayes_pls_golite062009
receptor serine/threonine kinase binding 0.55203098269909 bayes_pls_golite062009
pattern binding 0.35391370458515 bayes_pls_golite062009
YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle