YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|123980464, gi...
Organism:	synthetic construct
Length:	248 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|123980464, gi....

Description	E-value	Query Range	Subject Range
gi\|114673558 - gi\|114673558\|ref\|XP_512174.2\| PREDICTED: similar to C18orf55 protein isoform 2 [Pan troglodytes]	0.0	[1..248]	[1..248]
gi\|6841530, gi\|7... - gi\|7661810\|ref\|NP_054896.1\| hypothetical protein LOC29090 [Homo sapiens], gi\|6841530\|gb\|AAF29118.1\|A...	0.0	[1..248]	[1..248]
gi\|109122476 - gi\|109122476\|ref\|XP_001083249.1\| PREDICTED: similar to TIM21-like protein, mitochondrial precursor [...	0.0	[1..248]	[1..248]
gi\|21707747, gi\|... - gi\|74207662\|dbj\|BAE40076.1\| unnamed protein product [Mus musculus], gi\|21707747\|gb\|AAH34297.1\| RIKEN...	0.0	[1..247]	[1..243]
TIM21_RAT - Mitochondrial import inner membrane translocase subunit Tim21 OS=Rattus norvegicus GN=Timm21 PE=2 SV...	0.0	[1..247]	[1..244]
gi\|73945390 - gi\|73945390\|ref\|XP_848564.1\| PREDICTED: similar to CG7382-PA isoform 2 [Canis familiaris]	3.0E-91	[1..245]	[1..244]
TIM21_BOVIN - Mitochondrial import inner membrane translocase subunit Tim21 OS=Bos taurus GN=TIMM21 PE=2 SV=1	1.0E-86	[1..245]	[1..244]
CE25907 - status:Partially_confirmed UniProt:Q9TXR7 protein_id:AAK29831.1	2.0E-73	[14..244]	[6..213]

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Predicted Domain #1

Region A:
Residues: [1-133]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MICTFLRAVQ YTEKLHRSSA KRLLLPYIVL NKACLKTEPS LRCGLQYQKK TLRPRCILGV  60
   61 TQKTIWTQGP SPRKAKEDGS KQVSVHRSQR GGTAVPTSQK VKEAGRDFTY LIVVLFGISI 120
  121 TGGLFYTIFK ELF

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [134-248]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SSSSPSKIYG RALEKCRSHP EVIGVFGESV KGYGEVTRRG RRQHVRFTEY VKDGLKHTCV  60
   61 KFYIEGSEPG KQGTVYAQVK ENPGSGEYDF RYIFVEIESY PRRTIIIEDN RSQDD

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	28.69897
Match:	2ciuA
Description:	No description for 2ciuA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits