YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|123980464, gi...
Organism:	synthetic construct
Length:	248 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|123980464, gi....

Description	E-value	Query Range	Subject Range
gi\|114673558 - gi\|114673558\|ref\|XP_512174.2\| PREDICTED: similar to C18orf55 protein isoform 2 [Pan troglodytes]	0.0	[1..248]	[1..248]
gi\|6841530, gi\|7... - gi\|7661810\|ref\|NP_054896.1\| hypothetical protein LOC29090 [Homo sapiens], gi\|6841530\|gb\|AAF29118.1\|A...	0.0	[1..248]	[1..248]
gi\|109122476 - gi\|109122476\|ref\|XP_001083249.1\| PREDICTED: similar to TIM21-like protein, mitochondrial precursor [...	0.0	[1..248]	[1..248]
gi\|21707747, gi\|... - gi\|74207662\|dbj\|BAE40076.1\| unnamed protein product [Mus musculus], gi\|21707747\|gb\|AAH34297.1\| RIKEN...	0.0	[1..247]	[1..243]
TIM21_RAT - Mitochondrial import inner membrane translocase subunit Tim21 OS=Rattus norvegicus GN=Timm21 PE=2 SV...	0.0	[1..247]	[1..244]
gi\|73945390 - gi\|73945390\|ref\|XP_848564.1\| PREDICTED: similar to CG7382-PA isoform 2 [Canis familiaris]	3.0E-91	[1..245]	[1..244]
TIM21_BOVIN - Mitochondrial import inner membrane translocase subunit Tim21 OS=Bos taurus GN=TIMM21 PE=2 SV=1	1.0E-86	[1..245]	[1..244]
CE25907 - status:Partially_confirmed UniProt:Q9TXR7 protein_id:AAK29831.1	2.0E-73	[14..244]	[6..213]

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Predicted Domain #1

Region A:
Residues: [1-133]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MICTFLRAVQ YTEKLHRSSA KRLLLPYIVL NKACLKTEPS LRCGLQYQKK TLRPRCILGV  60
   61 TQKTIWTQGP SPRKAKEDGS KQVSVHRSQR GGTAVPTSQK VKEAGRDFTY LIVVLFGISI 120
  121 TGGLFYTIFK ELF

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [134-248]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SSSSPSKIYG RALEKCRSHP EVIGVFGESV KGYGEVTRRG RRQHVRFTEY VKDGLKHTCV  60
   61 KFYIEGSEPG KQGTVYAQVK ENPGSGEYDF RYIFVEIESY PRRTIIIEDN RSQDD

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	28.69897
Match:	2ciuA
Description:	No description for 2ciuA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits