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View Structure Prediction Details

Protein: gi|114624265, gi...
Organism: Pan troglodytes
Length: 134 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|114624265, gi....

Description E-value Query
Range
Subject
Range
gi|51870709, gi|... - gi|52546718|ref|NP_001005258.1| small inducible cytokine A21 [Canis lupus familiaris], gi|51870709|d...
2.0E-25 [1..133] [1..133]
gi|149045707, gi... - gi|56606078|ref|NP_001008513.1| small inducible cytokine A21 [Rattus norvegicus], gi|55824743|gb|AAH...
2.0E-25 [17..132] [17..130]
gi|187475069 - gi|187475069|gb|ACD12054.1| C-C chemokine ligand 21 [Macaca fascicularis]
CCL21_MACMU - C-C motif chemokine 21 OS=Macaca mulatta GN=CCL21 PE=2 SV=1
2.0E-24 [16..134] [16..131]
gi|7549787, gi|3... - gi|7549787|ref|NP_035465.1| chemokine (C-C motif) ligand 21b (leucine) [Mus musculus], gi|3169697|gb...
2.0E-23 [17..133] [17..133]
gi|27228299 - gi|27228299|gb|AAN85636.1| monocyte chemoattractant protein-1 [Sigmodon hispidus]
4.0E-23 [1..130] [1..126]

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Predicted Domain #1
Region A:
Residues: [1-134]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAQSLALSLL ILVLAFGIPR TQGSDGGAQD CCLKYSQRKI PAKVVRSYRK QEPSLGCSIP  60
   61 AILFLPRKRS QAELCADPKE LWVQQLMQHL DKTPSPQKPA QGCRKDRGAS KTGKKGKGSK 120
  121 GCKRTERSQT PKGP

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 17.30103
Match: 1eotA
Description: SOLUTION NMR STRUCTURE OF EOTAXIN, MINIMIZED AVERAGE STRUCTURE
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
chemokine activity 4.89918398910885 bayes_pls_golite062009
chemokine receptor binding 4.89918398910885 bayes_pls_golite062009
cytokine activity 4.83557343632317 bayes_pls_golite062009
G-protein-coupled receptor binding 4.76558176153203 bayes_pls_golite062009
binding 3.18185781962524 bayes_pls_golite062009
receptor binding 3.05971926490912 bayes_pls_golite062009
protein binding 2.65575365603289 bayes_pls_golite062009
interleukin-8 receptor binding 2.32709632592014 bayes_pls_golite062009
chemoattractant activity 1.20748075091352 bayes_pls_golite062009
signal transducer activity 0.0477394461694876 bayes_pls_golite062009
molecular transducer activity 0.0477394461694876 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle