YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: DNAJ_LISM4
Organism: Listeria monocytogenes 10403S
Length: 377 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for DNAJ_LISM4.

Description E-value Query
Range		 Subject
Range
gi|53612269, gi|... - gi|67158732|ref|ZP_00419593.1| DnaJ central domain (CXXCXGXG):Heat shock protein DnaJ, N-terminal:Ch...
DNAJ_AZOVD - Chaperone protein DnaJ OS=Azotobacter vinelandii (strain DJ / ATCC BAA-1303) GN=dnaJ PE=3 SV=1
 393.0 [0..1] [375..1]
gi|107103857 - gi|107103857|ref|ZP_01367775.1| hypothetical protein PaerPA_01004928 [Pseudomonas aeruginosa PACS2]
DNAJ_PSEA8 - Chaperone protein DnaJ OS=Pseudomonas aeruginosa (strain LESB58) GN=dnaJ PE=3 SV=1
DNAJ_PSEAE - Chaperone protein dnaJ OS=Pseudomonas aeruginosa GN=dnaJ PE=3 SV=1
DNAJ_PSEAB - Chaperone protein DnaJ OS=Pseudomonas aeruginosa (strain UCBPP-PA14) GN=dnaJ PE=3 SV=1
DNAJ_PSEAE - Chaperone protein DnaJ OS=Pseudomonas aeruginosa (strain ATCC 15692 / PAO1 / 1C / PRS 101 / LMG 1222...
gi|194549490, gi... - gi|84317360|ref|ZP_00965808.1| COG0484: DnaJ-class molecular chaperone with C-terminal Zn finger dom...
gi|126197717, gi... - gi|84323584|ref|ZP_00971653.1| COG0484: DnaJ-class molecular chaperone with C-terminal Zn finger dom...
 392.0 [0..1] [375..1]
gi|33578041 - gi|33578041|gb|AAQ22347.1| heat shock protein [Pseudomonas stutzeri A15]
tr|F8GZK8|F8GZK8... - Chaperone protein DnaJ OS=Pseudomonas stutzeri (strain ATCC 17588 / DSM 5190 / CCUG 11256 / JCM 5965...
DNAJ_PSEST - Chaperone protein DnaJ OS=Pseudomonas stutzeri GN=dnaJ PE=3 SV=1
tr|F2N4J3|F2N4J3... - Chaperone protein DnaJ OS=Pseudomonas stutzeri (strain DSM 4166 / CMT.9.A) GN=dnaJ PE=3 SV=1
 389.0 [0..1] [375..1]
DNAJ_PSEPK - Chaperone protein DnaJ OS=Pseudomonas putida (strain KT2440) GN=dnaJ PE=3 SV=1
tr|E4R635|E4R635... - Chaperone protein DnaJ OS=Pseudomonas putida (strain BIRD-1) GN=dnaJ PE=3 SV=1
 389.0 [0..1] [375..1]
gi|238782689, gi... - gi|238782689|ref|ZP_04626719.1| hypothetical protein yberc0001_9760 [Yersinia bercovieri ATCC 43970]...
gi|77961939, gi|... - gi|77961939|ref|ZP_00825767.1| COG0484: DnaJ-class molecular chaperone with C-terminal Zn finger dom...
 387.0 [0..1] [375..1]
DNAJ_PSEA7 - Chaperone protein DnaJ OS=Pseudomonas aeruginosa (strain PA7) GN=dnaJ PE=3 SV=1
 387.0 [0..1] [375..1]
gi|238795016, gi... - gi|77976926|ref|ZP_00832391.1| COG0484: DnaJ-class molecular chaperone with C-terminal Zn finger dom...
 387.0 [0..1] [375..1]
gi|95109000 - gi|95109000|emb|CAK13696.1| Chaperone protein DnaJ [Pseudomonas]
DNAJ_PSEE4 - Chaperone protein DnaJ OS=Pseudomonas entomophila (strain L48) GN=dnaJ PE=3 SV=1
 387.0 [0..1] [375..1]
gi|77976156, gi|... - gi|77976156|ref|ZP_00831689.1| COG0484: DnaJ-class molecular chaperone with C-terminal Zn finger dom...
 385.0 [0..1] [375..1]
DNAJ_THIDA - Chaperone protein DnaJ OS=Thiobacillus denitrificans (strain ATCC 25259) GN=dnaJ PE=3 SV=1
 385.0 [0..1] [375..1]

Back

Predicted Domain #1
Region A:
Residues: [1-89] 
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAKRDYYEVL GISKSASADE IKKAYRKLSK QYHPDINKEA GADEKFKEIS EAYEALSDPQ  60
   61 KRAQYDQYGH VDPNQGFGGG GAGGGFGGG

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 23.0
Match: 1bq0A
Description: J-DOMAIN (RESIDUES 1-77) OF THE ESCHERICHIA COLI N-TERMINAL FRAGMENT (RESIDUES 1-104) OF THE MOLECULAR CHAPERONE DNAJ, NMR, 20 STRUCTURES
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
unfolded protein binding 3.04403163860617 bayes_pls_golite062009
protein binding 2.65982681685488 bayes_pls_golite062009
binding 2.63138872417193 bayes_pls_golite062009
transcription regulator activity 2.31739509739943 bayes_pls_golite062009
heat shock protein binding 2.17994194200939 bayes_pls_golite062009
DNA binding 1.88444505115207 bayes_pls_golite062009
nucleic acid binding 1.73387701301727 bayes_pls_golite062009
chaperone binding 1.61155546076854 bayes_pls_golite062009
nucleoside-triphosphatase regulator activity 0.927337691912581 bayes_pls_golite062009
enzyme regulator activity 0.675735261884317 bayes_pls_golite062009
Hsp70 protein binding 0.541755903922701 bayes_pls_golite062009
transferase activity 0.240656521918556 bayes_pls_golite062009
GTPase regulator activity 0.130185025729857 bayes_pls_golite062009
catalytic activity 0.106988907594358 bayes_pls_golite062009
phosphotransferase activity, alcohol group as acceptor 0.0276971914937192 bayes_pls_golite062009

Predicted Domain #2
Region A:
Residues: [90-377] 
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GFSGFEDIFD TFFGGGGRQQ DPNAPRQGSD LQYTMRLKFK EAIFGKDAEI EIPREENCDT  60
   61 CHGSGAKPGT TPEKCSHCGG KGSINVEQNT PFGRVVNKRT CQYCNGTGKE IKEKCPTCHG 120
  121 KGRVTKTKKI KVKVPAGVND GQQMRVSGEG EAGINGGPNG DLYVVFVVIP DEFFEREADD 180
  181 IYVEVPITFV QATLGDEIDV PTVHGKVRLK IPSGTQTGTT FRLRGKGVPH LRGNGTGDQH 240
  241 VIVKVIVPKK LDDKQKEILR EFASTTGDKV DEQTSGFFDK MKRAFKGD

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 44.69897
Match: 1nltA
Description: The crystal structure of Hsp40 Ydj1
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
binding 2.7298921704023 bayes_pls_golite062009
protein binding 2.6297172985864 bayes_pls_golite062009
protein disulfide isomerase activity 2.4409950647303 bayes_pls_golite062009
intramolecular oxidoreductase activity, transposing S-S bonds 2.4409950647303 bayes_pls_golite062009
intramolecular oxidoreductase activity, interconverting keto- and enol-groups 2.23398279564144 bayes_pls_golite062009
unfolded protein binding 2.04158808514315 bayes_pls_golite062009
nucleoside-triphosphatase regulator activity 0.594882036388263 bayes_pls_golite062009
enzyme regulator activity 0.301226589648736 bayes_pls_golite062009
catalytic activity 0.276917867171685 bayes_pls_golite062009
YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle