YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|116049525, gi...
Organism:	Pseudomonas aeruginosa UCBPP-PA14
Length:	428 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|116049525, gi....

Description	E-value	Query Range	Subject Range
gi\|67156800, gi\|... - gi\|67156800\|ref\|ZP_00418297.1\| Citrate synthase I [Azotobacter vinelandii AvOP], gi\|67085989\|gb\|EAM0... gi\|67156800 - gi\|67156800\|ref\|ZP_00418297.1\| Citrate synthase I [Azotobacter vinelandii AvOP]	0.0	[1..427]	[1..427]
gi\|68234 - gi\|68234\|pir\|\|YKPSCA citrate (si)-synthase (EC 4.1.3.7) - Pseudomonas aeruginosa	0.0	[1..428]	[1..428]
gi\|151937755, gi... - gi\|75854801\|ref\|ZP_00762474.1\| COG0372: Citrate synthase [Vibrio sp. Ex25], gi\|254229710\|ref\|ZP_0492... gi\|91188007, gi\|... - gi\|91228423\|ref\|ZP_01262348.1\| type II citrate synthase [Vibrio alginolyticus 12G01], gi\|91188007\|gb...	0.0	[1..427]	[1..428]
gi\|90411594, gi\|... - gi\|90411594\|ref\|ZP_01219604.1\| citrate synthase [Photobacterium profundum 3TCK], gi\|90327484\|gb\|EAS4...	0.0	[1..427]	[1..428]
gi\|37197954, gi\|... - gi\|37679211\|ref\|NP_933820.1\| type II citrate synthase [Vibrio vulnificus YJ016], gi\|37197954\|dbj\|BAC... gi\|27363645, gi\|... - gi\|27363645\|ref\|NP_759173.1\| type II citrate synthase [Vibrio vulnificus CMCP6], gi\|27359761\|gb\|AAO0...	0.0	[1..427]	[1..428]
gi\|110834362, gi... - gi\|110834362\|ref\|YP_693221.1\| type II citrate synthase [Alcanivorax borkumensis SK2], gi\|110647473\|e...	0.0	[1..427]	[1..426]
gi\|28805828 - gi\|28805828\|dbj\|BAC59105.1\| citrate synthase [Vibrio parahaemolyticus RIMD 2210633] gi\|28897616, gi\|... - gi\|28897616\|ref\|NP_797221.1\| type II citrate synthase [Vibrio parahaemolyticus RIMD 2210633], gi\|288... gi\|149748017, gi... - gi\|153838599\|ref\|ZP_01991266.1\| citrate synthase I [Vibrio parahaemolyticus AQ3810], gi\|149748017\|gb...	0.0	[1..427]	[1..428]
gi\|68343402, gi\|... - gi\|70729103\|ref\|YP_258839.1\| type II citrate synthase [Pseudomonas fluorescens Pf-5], gi\|68343402\|gb...	0.0	[1..427]	[1..428]
tr\|A0A085R9U9\|A0... - Citrate synthase OS=Vibrio cholerae GN=gltA PE=3 SV=1 gi\|116189055 - gi\|116189055\|ref\|ZP_01478815.1\| hypothetical protein VchoM_02002077 [Vibrio cholerae MO10] gi\|75814751 - gi\|75814751\|ref\|ZP_00745304.1\| COG0372: Citrate synthase [Vibrio cholerae V52] gi\|116219290 - gi\|116219290\|ref\|ZP_01484794.1\| hypothetical protein VchoV5_02002610 [Vibrio cholerae V51]	0.0	[1..427]	[1..428]

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Predicted Domain #1

Region A:
Residues: [1-428]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MADKKAQLII EGSAPVELPV LSGTMGPDVV DVRGLTATGH FTFDPGFMST ASCESKITYI  60
   61 DGDKGVLLHR GYPIEQLAEK SDYLETCYLL LNGELPTAAQ KEQFVGTIKN HTMVHEQLKT 120
  121 FFNGFRRDAH PMAVMCGVIG ALSAFYHDSL DINNPKHREV SAHRLIAKMP TIAAMVYKYS 180
  181 KGEPMMYPRN DLNYAENFLH MMFNTPCETK PISPVLAKAM DRIFILHADH EQNASTSTVR 240
  241 LAGSSGANPF ACIASGIAAL WGPAHGGANE AVLRMLDEIG DVSNIDKFVE KAKDKNDPFK 300
  301 LMGFGHRVYK NFDPRAKVMK QTCDEVLQEL GINDPQLELA MKLEEIARHD PYFVERNLYP 360
  361 NVDFYSGIIL KAIGIPTSMF TVIFALARTV GWISHWQEML SGPYKIGRPR QLYTGHTQRD 420
  421 FTALKDRG

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	164.0
Match:	1owbA
Description:	Three Dimensional Structure Analysis Of The Variant R109L NADH Complex of Type II Citrate Synthase From E. Coli
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
citrate (Si)-synthase activity	7.90380661459876	bayes_pls_golite062009
transferase activity, transferring acyl groups, acyl groups converted into alkyl on transfer	7.35970609422108	bayes_pls_golite062009
transferase activity, transferring acyl groups	4.98392594633005	bayes_pls_golite062009
catalytic activity	2.51855037019879	bayes_pls_golite062009
transferase activity	2.22659761972612	bayes_pls_golite062009
binding	1.15467737113069	bayes_pls_golite062009
protein binding	0.210158634792359	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: