YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|114609377
Organism:	Pan troglodytes
Length:	179 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|114609377.

Description	E-value	Query Range	Subject Range
gi\|16611800 - gi\|16611800\|gb\|AAL27367.1\| myogenic factor 5 [Equus caballus]	4.0E-28	[1..178]	[4..181]
MYF5_BOVIN - Myogenic factor 5 OS=Bos taurus GN=MYF5 PE=2 SV=1	2.0E-26	[1..178]	[4..181]
gi\|2801465, gi\|9... - gi\|9629901\|ref\|NP_045935.1\| p110 [Avian myelocytomatosis virus], gi\|61609\|emb\|CAA24499.1\| p96 polypr... gi\|625263 - gi\|625263\|pir\|\|FOFV29 gag-myc polyprotein - avian myelocytomatosis virus MC29 (provirus)	4.0E-26	[16..162]	[723..873]
MYF5 - myogenic factor 5 gi\|114646066 - gi\|114646066\|ref\|XP_522481.2\| PREDICTED: myogenic factor 5 [Pan troglodytes]	3.0E-25	[1..178]	[4..181]
gi\|45360427, gi\|... - gi\|89269838\|emb\|CAJ82544.1\| myogenic factor 5 [Xenopus tropicalis], gi\|45360427\|ref\|NP_988932.1\| myo...	4.0E-25	[1..178]	[4..181]
gi\|54695668 - gi\|54695668\|gb\|AAV38206.1\| myogenic factor 5 [Homo sapiens]	4.0E-25	[1..178]	[4..181]
gi\|73977483 - gi\|73977483\|ref\|XP_852162.1\| PREDICTED: similar to Myogenic factor 5 (Myf-5) isoform 2 [Canis famili...	8.0E-25	[1..178]	[4..181]

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Predicted Domain #1

Region A:
Residues: [1-179]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSTGSLSDVE DLQEVEMLEC DGLKMDSNKE FVTSNESTEE SSNCENGSPQ KGRGGLGKRR  60
   61 KAPTKKSPLS GVSQEGKQVQ RNAANARERA RMRVLSKAFS RLKTTLPWVP PDTKLSKLDT 120
  121 LRLASSYIAH LRQILANDKY ENGYIHPVNL TWPFMVAGKP ESDLKEVVTA SRLCGTTAS

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	17.154902
Match:	1nkpA
Description:	Myc prot-oncogene protein
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
binding	2.04189889011459	bayes_pls_golite062009
DNA binding	1.57198412842008	bayes_pls_golite062009
transcription regulator activity	1.51367486803231	bayes_pls_golite062009
transcription factor activity	1.48896865387791	bayes_pls_golite062009
protein binding	0.90375176425983	bayes_pls_golite062009
nucleic acid binding	0.863712081656127	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: