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View Structure Prediction Details

Protein: gi|114652258, gi...
Organism: Pan troglodytes
Length: 237 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|114652258, gi....

Description E-value Query
Range
Subject
Range
gi|30584169, gi|... - gi|61370162|gb|AAX43447.1| neural retina leucine zipper [synthetic construct], gi|61370156|gb|AAX434...
9.0E-42 [1..237] [1..237]
NRL_MOUSE - Neural retina-specific leucine zipper protein OS=Mus musculus GN=Nrl PE=1 SV=1
2.0E-41 [1..237] [1..237]
gi|57090455 - gi|57090455|ref|XP_547742.1| PREDICTED: similar to Neural retina-specific leucine zipper protein (NR...
1.0E-40 [1..237] [1..237]
gi|109083087, gi... - gi|109083089|ref|XP_001111646.1| PREDICTED: neural retina leucine zipper isoform 3 [Macaca mulatta],...
5.0E-40 [1..237] [1..239]
gi|76626842 - gi|76626842|ref|XP_599808.2| PREDICTED: similar to Neural retina-specific leucine zipper protein (NR...
8.0E-39 [1..230] [1..230]
gi|27700060, gi|... - gi|27700060|ref|XP_224189.1| PREDICTED: similar to Neural retina-specific leucine zipper protein (NR...
1.0E-38 [1..237] [1..238]
MAFA_COTJA - Transcription factor MafA OS=Coturnix coturnix japonica GN=MAFA PE=1 SV=1
8.0E-32 [3..226] [11..266]
MAFA_CHICK - Transcription factor MafA OS=Gallus gallus GN=MAFA PE=1 SV=1
4.0E-31 [3..234] [11..273]

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Predicted Domain #1
Region A:
Residues: [1-150]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MALPPSPLAM EYVNDFDLMK FEVKREPSEG RPGPPTASLG STPYSSVPPS PTFSEPGMVG  60
   61 ATEGTRPGLE ELYWLATLQQ QLGAGEALGL SPEEAMELLQ GQGPVPVDGP HGYYPGSPEE 120
  121 TGAQHVQLAE RFSDAALVSM SVRELNRQLR 

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [151-237]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GCGRDEALRL KQRRRTLKNR GYAQACRSKR LQQRRGLEAE RARLAAQLDA LRAEVARLAR  60
   61 ERDLYKARCD RLTSSGPGSG DPSHLFL

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 12.69897
Match: 1gtwA
Description: CRYSTAL STRUCTURE OF C/EBPBETA BZIP HOMODIMER BOUND TO A DNA FRAGMENT FROM THE TOM-1A PROMOTER
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle