| Protein: | gi|123983004, gi... |
| Organism: | synthetic construct |
| Length: | 328 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|123983004, gi....
| Description | E-value | Query Range |
Subject Range |
|
|
5.0E-53 | [1..328] | [1..328] |
|
|
5.0E-52 | [18..328] | [14..324] |
|
|
3.0E-51 | [18..328] | [14..324] |
|
|
1.0E-49 | [29..328] | [191..508] |
|
|
1.0E-49 | [1..328] | [1..330] |
|
|
3.0E-46 | [3..328] | [2..321] |
|
|
8.0E-46 | [3..328] | [2..340] |
|
Region A: Residues: [1-186] |
1 11 21 31 41 51
| | | | | |
1 MEANGSQGTS GSANDSQHDP GKMFIGGLSW QTSPDSLRDY FSKFGEIREC MVMRDPTTKR 60
61 SRGFGFVTFA DPASVDKVLG QPHHELDSKT IDPKVAFPRR AQPKMVTRTK KIFVGGLSAN 120
121 TVVEDVKQYF EQFGKVEDAM LMFDKTTNRH RGFGFVTFEN EDVVEKVCEI HFHEINNKMV 180
181 ECKKAQ
|
| Detection Method: |  |
| Confidence: | 41.045757 |
| Match: | 1pgzA |
| Description: | Crystal Structure of UP1 Complexed With d(TTAGGGTTAG(6-MI)G); A Human Telomeric Repeat Containing 6-methyl-8-(2-deoxy-beta-ribofuranosyl)isoxanthopteridine (6-MI) |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| RNA binding | 6.73097473547076 | bayes_pls_golite062009 |
| 6.62953239642182 | bayes_pls_golite062009 | |
| mRNA binding | 5.29759606920196 | bayes_pls_golite062009 |
| poly(U) RNA binding | 4.76054718156645 | bayes_pls_golite062009 |
| nucleic acid binding | 3.81920018903278 | bayes_pls_golite062009 |
| snRNA binding | 3.28448936696877 | bayes_pls_golite062009 |
| poly-pyrimidine tract binding | 3.11990160533699 | bayes_pls_golite062009 |
| binding | 3.05116833253954 | bayes_pls_golite062009 |
| single-stranded RNA binding | 2.93798024346416 | bayes_pls_golite062009 |
| U1 snRNA binding | 2.26303528058407 | bayes_pls_golite062009 |
| structural molecule activity | 1.29928829870122 | bayes_pls_golite062009 |
| protein binding | 1.14508556628804 | bayes_pls_golite062009 |
| transcription regulator activity | 1.07788694919471 | bayes_pls_golite062009 |
| DNA binding | 0.978604858165557 | bayes_pls_golite062009 |
| mRNA 3'-UTR binding | 0.591700155096213 | bayes_pls_golite062009 |
| transcription factor activity | 0.234742017105535 | bayes_pls_golite062009 |
|
Region A: Residues: [187-328] |
1 11 21 31 41 51
| | | | | |
1 PKEVMFPPGT RGRARGLPYT MDAFMLGMGM LGYPNFVATY GRGYPGFAPS YGYQFPGFPA 60
61 AAYGPVAAAA VAAARGSGSN PARPGGFPGA NSPGPVADLY GPASQDSGVG NYISAASPQP 120
121 GSGFGHGIAG PLIATAFTNG YH
|
| Detection Method: | |
| Confidence: | 4.0 |
| Match: | 1m2vB |
| Description: | Sec24 |
Matching Structure (courtesy of the PDB): |
|
