YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|153198073, gi...
Organism:	Listeria monocytogenes 10403S
Length:	476 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|153198073, gi....

Description	E-value	Query Range	Subject Range
GATB_GEOMG - Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B OS=Geobacter metallireducens (strain GS-1...	756.0	[0..1]	[474..1]
GATB_CARHZ - Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B OS=Carboxydothermus hydrogenoformans (str...	754.0	[0..2]	[475..3]
GATB_GEOUR - Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B OS=Geobacter uraniireducens (strain Rf4) ...	753.0	[0..1]	[474..1]
GATB_GEOSL - Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B OS=Geobacter sulfurreducens GN=gatB PE=3 ... GATB_GEOSL - Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B OS=Geobacter sulfurreducens (strain ATCC ...	753.0	[0..1]	[474..1]
GATB_MOOTA - Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B OS=Moorella thermoacetica (strain ATCC 39...	750.0	[0..1]	[473..1]
gi\|88925125, gi\|... - gi\|88945252\|ref\|ZP_01148466.1\| Glutamyl-tRNA(Gln) amidotransferase B subunit [Desulfotomaculum reduc...	750.0	[0..2]	[473..4]
GATB_GEODF - Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B OS=Geobacter daltonii (strain DSM 22248 /...	749.0	[0..1]	[474..1]
gi\|98660243 - gi\|98660243\|dbj\|GAA02418.1\| unnamed protein product [Pelotomaculum thermopropionicum SI]	748.0	[0..2]	[473..19]
GATB_PELCD - Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B OS=Pelobacter carbinolicus (strain DSM 23...	746.0	[0..3]	[473..5]
GATB_GEOKA - Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B OS=Geobacillus kaustophilus (strain HTA42... GATB_GEOKA - Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B OS=Geobacillus kaustophilus GN=gatB PE=3 ...	745.0	[0..1]	[476..1]

Back

Predicted Domain #1

Region A:
Residues: [1-476]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNFETVIGLE VHVELKTNSK IFSSAPAHFG AEPNTNTTVV DLGMPGVLPV LNKRAVEFGM  60
   61 KAAMAINCEI AEHTKFDRKN YFYPDNPKAY QISQFDKPIG EHGWIEIEVG GKKKKIGITR 120
  121 LHLEEDAGKN THTSHGYSLV DINRQGTPLI EIVSEPDIRS AEEAYAYLEK LKSIIQYTGV 180
  181 SDVKMEEGSM RCDANISIRP IGQEEFGVKT ELKNLNSFNN VRKGIEYEEK RQAEVLKSGG 240
  241 IIEQETRRFE EATGKTSLMR IKEGSDDYRY FPEPDLVDLF IDDAWKERIR AEIPELPDKR 300
  301 QIRYINDLGL PAYDAMVLTL TKEMSDFFEA TLVAGADAKQ ASNWLMGEVS AYLNAEQKEL 360
  361 HETGLTPENL AGMIKLIEAG TISSKIAKKV FRELAQNGGD AEQVVKDKGL VQISDEGALR 420
  421 TIISEILDNN EQSIVDFKNG KDRAVGFLVG QVMKATKGQA NPPMVNKLLL EEMNKR

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	1000.0
Match:	2df4B
Description:	No description for 2df4B was found.

Predicted functions:

Term	Confidence	Notes
glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity	6.94703732461209	bayes_pls_golite062009
ligase activity	5.28014676041088	bayes_pls_golite062009
catalytic activity	1.08973967683802	bayes_pls_golite062009
binding	1.0468360119595	bayes_pls_golite062009
ammonia ligase activity	0.978763138251862	bayes_pls_golite062009
ligase activity, forming carbon-nitrogen bonds	0.789800177023595	bayes_pls_golite062009
acid-ammonia (or amide) ligase activity	0.632807059205458	bayes_pls_golite062009
nucleic acid binding	0.545649763280687	bayes_pls_golite062009
protein binding	0.440356087696859	bayes_pls_golite062009
kinase activity	0.21984983699175	bayes_pls_golite062009
transferase activity, transferring phosphorus-containing groups	0.132389278472779	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: