YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|117616294
Organism:	synthetic construct
Length:	236 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|117616294.

Description	E-value	Query Range	Subject Range
CD81 - CD81 molecule CD81_PANTR - CD81 antigen OS=Pan troglodytes GN=CD81 PE=2 SV=1 gi\|123981866, gi... - gi\|61356417\|gb\|AAX41243.1\| CD81 antigen [synthetic construct], gi\|61356406\|gb\|AAX41242.1\| CD81 antig...	207.0	[0..1]	[236..1]
CD81_BOVIN - CD81 antigen OS=Bos taurus GN=CD81 PE=2 SV=1	206.0	[0..1]	[236..1]
CD81_SAGOE - CD81 protein OS=Saguinus oedipus GN=CD81 PE=2 SV=1	205.0	[0..1]	[236..1]
gi\|61366274, gi\|... - gi\|61366274\|gb\|AAX42838.1\| CD81 antigen [synthetic construct], gi\|54695882\|gb\|AAV38313.1\| CD81 antig...	205.0	[0..1]	[236..1]
gi\|109104994 - gi\|109104994\|ref\|XP_001093228.1\| PREDICTED: CD81 molecule [Macaca mulatta] CD81_CHLAE - CD81 antigen OS=Chlorocebus aethiops GN=CD81 PE=2 SV=1	205.0	[0..1]	[236..1]
gi\|149061756, gi... - gi\|62641476\|ref\|XP_579369.1\| PREDICTED: CD 81 antigen [Rattus norvegicus], gi\|38014843\|gb\|AAH60583.1... gi\|226530797, gi... - gi\|226530797\|ref\|NP_001140831.1\| hypothetical protein LOC100272906 [Zea mays], gi\|194701338\|gb\|ACF84...	204.0	[0..1]	[236..1]
gi\|74201839 - gi\|74201839\|dbj\|BAE22950.1\| unnamed protein product [Mus musculus]	204.0	[0..1]	[236..1]
gi\|115522021, gi... - gi\|118403822\|ref\|NP_001072147.1\| CD81 antigen [Sus scrofa], gi\|115522021\|gb\|ABJ09400.1\| CD81 antigen...	201.0	[0..1]	[236..1]

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Predicted Domain #1

Region A:
Residues: [1-119]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGVEGCTKCI KYLLFVFNFV FWLAGGVILG VALWLRHDPQ TTSLLYLELG NKPAPNTFYV  60
   61 GIYILIAVGA VMMFVGFLGC YGAIQESQCL LGTFFTCLVI LFACEVAAGI WGFVNKDQI

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.1
Match:	1oedC
Description:	Acetylcholine receptor protein, delta chain
Matching Structure (courtesy of the PDB):

Predicted Domain #2

Region A:
Residues: [120-236]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 AKDVKQFYDQ ALQQAVMDDD ANNAKAVVKT FHETLNCCGS NALTTLTTTI LRNSLCPSGG  60
   61 NILTPLLQQD CHQKIDELFS GKLYLIGIAA IVVAVIMIFE MILSMVLCCG IRNSSVY

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	12.09691
Match:	1g8qA
Description:	CD81 extracellular domain
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
protein binding	1.71804056581958	bayes_pls_golite062009
binding	1.62531598262239	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: