YRC Public Data Repository - Protein Structure Prediction

Protein:	VDAC1_RAT
Organism:	Rattus norvegicus
Length:	283 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for VDAC1_RAT.

Description	E-value	Query Range	Subject Range
gi\|114619980 - gi\|114619980\|ref\|XP_001138480.1\| PREDICTED: similar to voltage dependent anion channel form 3 [Pan t...	363.0	[0..1]	[283..288]
VDAC2_MOUSE - Voltage-dependent anion-selective channel protein 2 OS=Mus musculus GN=Vdac2 PE=1 SV=2 gi\|53733651 - gb\|AAH83965.1\| Unknown (protein for MGC:98006) [Xenopus laevis]	360.0	[0..1]	[283..13]
ENSPTRT00000004999 - null gi\|55664663, gi\|... - gi\|57209203\|emb\|CAI40914.1\| voltage-dependent anion channel 2 [Homo sapiens], gi\|55664663\|emb\|CAH731...	359.0	[0..1]	[283..27]
gi\|56541190 - gi\|56541190\|gb\|AAH87573.1\| Unknown (protein for IMAGE:7304939) [Rattus norvegicus]	357.0	[0..1]	[283..16]
gi\|149726367 - gi\|149726367\|ref\|XP_001504459.1\| PREDICTED: similar to voltage-dependent anion channel 1 [Equus caba... VDAC1_RABIT - Voltage-dependent anion-selective channel protein 1 OS=Oryctolagus cuniculus GN=VDAC1 PE=2 SV=3 VDAC1_BOVIN - Voltage-dependent anion-selective channel protein 1 OS=Bos taurus GN=VDAC1 PE=1 SV=3 gi\|57093539 - gi\|57093539\|ref\|XP_531907.1\| PREDICTED: similar to Voltage-dependent anion-selective channel protein...	357.0	[0..1]	[283..1]

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Predicted Domain #1

Region A:
Residues: [1-163]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAVPPTYADL GKSARDVFTK GYGFGLIKLD LKTKSENGLE FTSSGSANTE TTKVNGSLET  60
   61 KYRWTEYGLT FTEKWNTDNT LGTEITVEDQ LARGLKLTFD SSFSPNTGKK NAKIKTGYKR 120
  121 EHINLGCDVD FDIAGPSIRG ALVLGYEGWL AGYQMNFETS KSR

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	5.920819
Match:	PF01459.13
Description:	No description for PF01459.13 was found.

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.777	N/A	N/A	b.1.6	Cadherin
View	Download	0.710	N/A	N/A	d.93.1	SH2 domain
View	Download	0.704	N/A	N/A	d.81.1	Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain
View	Download	0.688	N/A	N/A	d.70.1	Yest killer toxins
View	Download	0.683	N/A	N/A	b.1.6	Cadherin

Predicted Domain #2

Region A:
Residues: [164-283]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 VTQSNFAVGY KTDEFQLHTN VNDGTEFGGS IYQKVNKKLE TAVNLAWTAG NSNTRFGIAA  60
   61 KYQVDPDACF SAKVNNSSLI GLGYTQTLKP GIKLTLSALL DGKNVNAGGH KLGLGLEFQA 120
  121

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.01
Match:	2ervA
Description:	No description for 2ervA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits