YRC Public Data Repository - Protein Structure Prediction

Protein:	AES_RAT
Organism:	Rattus norvegicus
Length:	197 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for AES_RAT.

Description	E-value	Query Range	Subject Range
gi\|114625124 - gi\|114625124\|ref\|XP_001151507.1\| PREDICTED: transducin-like enhancer protein 4 isoform 13 [Pan trogl...	372.0	[0..2]	[191..8]
gi\|71052126 - gi\|71052126\|gb\|AAH59405.2\| TLE4 protein [Homo sapiens]	371.0	[0..2]	[191..8]
gi\|109111858 - gi\|109111858\|ref\|XP_001103029.1\| PREDICTED: transducin-like enhancer of split 4 (E(sp1) homolog, Dro...	371.0	[0..2]	[191..8]
gi\|22255339, gi\|... - gi\|45383652\|ref\|NP_989568.1\| transducin-like enhancer of split 4 (E(sp1) homolog, Drosophila) [Gallu...	370.0	[0..2]	[191..8]
gi\|183396973 - gi\|183396973\|gb\|AAI65993.1\| Transducin-like enhancer of split 4, homolog of Drosophila E(spl) [synth... TLE4_MOUSE - Transducin-like enhancer protein 4 OS=Mus musculus GN=Tle4 PE=1 SV=4	370.0	[0..2]	[191..8]

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Predicted Domain #1

Region A:
Residues: [1-197]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMFPQSRHSG SSHLPQQLKF TTSDSCDRIK DEFQLLQAQY HSLKLECDKL ASEKSEMQRH  60
   61 YVMYYEMSYG LNIEMHKQAE IVKRLNGICA QVLPYLSQEH QQQVLGAIER AKQVTAPELN 120
  121 SIIRQQLQAH QLSQLQALAL PLTPLPVGLQ PPSLPAVSAG TGLLSLSALG SQTHLSKEDK 180
  181 NGHDGDTHQE DDGEKSD

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	90.537602
Match:	PF03920.6
Description:	No description for PF03920.6 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits