YRC Public Data Repository - Protein Structure Prediction

Protein:	RS27A_RAT
Organism:	Rattus norvegicus
Length:	156 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RS27A_RAT.

Description	E-value	Query Range	Subject Range
gi\|114577583 - gi\|114577583\|ref\|XP_001147989.1\| PREDICTED: similar to RPS27A protein [Pan troglodytes]	259.0	[0..1]	[156..80]
gi\|73970166 - gi\|73970166\|ref\|XP_531829.2\| PREDICTED: similar to ubiquitin and ribosomal protein S27a precursor [C...	252.0	[0..1]	[156..73]
gi\|73586974 - gi\|73586974\|gb\|AAI02492.1\| RPS27A protein [Bos taurus]	250.0	[0..1]	[156..26]
gi\|29612581 - gi\|29612581\|gb\|AAH49478.1\| Zgc:66168 protein [Danio rerio]	247.0	[0..1]	[156..17]
gi\|600539 - gi\|600539\|gb\|AAA57047.1\| ubiquitin [synthetic construct]	244.0	[0..1]	[156..1]
RS27A_CAVPO - Ubiquitin-40S ribosomal protein S27a OS=Cavia porcellus GN=RPS27A PE=1 SV=2 gi\|148222699, gi... - gi\|49257574\|gb\|AAH74147.1\| MGC81889 protein [Xenopus laevis], gi\|148222699\|ref\|NP_001086065.1\| MGC81... gi\|189055074, gi... - gi\|70656\|pir\|\|UQHUR7 ubiquitin / ribosomal protein S27a, cytosolic [validated] - human, gi\|4506713\|r... RS27A_BOVIN - Ubiquitin-40S ribosomal protein S27a OS=Bos taurus GN=RPS27A PE=1 SV=2 gi\|55595793 - gi\|55595793\|ref\|XP_515482.1\| PREDICTED: hypothetical protein XP_515482 [Pan troglodytes] gi\|149727572 - gi\|149727572\|ref\|XP_001496841.1\| PREDICTED: similar to ubiquitin and ribosomal protein S27a [Equus c... gi\|126303852 - gi\|126303852\|ref\|XP_001375230.1\| PREDICTED: similar to ubiquitin [Monodelphis domestica] gi\|149640802, gi... - gi\|149640802\|ref\|XP_001509244.1\| PREDICTED: similar to ubiquitin isoform 1 [Ornithorhynchus anatinus... tr\|M3WWF6\|M3WWF6... - Ribosomal protein S27a OS=Felis catus GN=RPS27A PE=4 SV=1 ENSOCUP000000031... - pep:known scaffold:oryCun2:AAGW02082242:9564:11919:1 gene:ENSOCUG00000003613 transcript:ENSOCUT00000... CCDS33202.1_1 - null gi\|67970806 - gi\|67970806\|dbj\|BAE01745.1\| unnamed protein product [Macaca fascicularis] gi\|109103033 - gi\|109103033\|ref\|XP_001112274.1\| PREDICTED: similar to ubiquitin and ribosomal protein S27a precurso... gi\|62859181, gi\|... - gi\|89268219\|emb\|CAJ83451.1\| ribosomal protein S27a [Xenopus tropicalis], gi\|62859181\|ref\|NP_00101617... ENSCJAT000000195... - null, null	243.0	[0..1]	[156..1]
gi\|94378076 - gi\|94378076\|ref\|XP_001002242.1\| PREDICTED: similar to fusion protein: ubiquitin (bases 43_513); ribo...	243.0	[0..1]	[156..1]
gi\|300676798\|gb\|... - ribosomal protein S27a [Zonotrichia albicollis], ribosomal protein S27a [Zonotrichia albicollis] RS27A_CHICK - Ubiquitin-40S ribosomal protein S27a OS=Gallus gallus GN=RPS27A PE=2 SV=3 gi\|224047492 - gi\|224047492\|ref\|XP_002199635.1\| PREDICTED: similar to ribosomal protein S27a [Taeniopygia guttata]	242.0	[0..1]	[156..1]

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Predicted Domain #1

Region A:
Residues: [1-93]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQIFVKTLTG KTITLEVEPS DTIENVKAKI QDKEGIPPDQ QRLIFAGKQL EDGRTLSDYN  60
   61 IQKESTLHLV LRLRGGAKKR KKKSYTTPKK NKH

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	38.69897
Match:	2ojrA
Description:	No description for 2ojrA was found.

Predicted Domain #2

Region A:
Residues: [94-156]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KRKKVKLAVL KYYKVDENGK ISRLRRECPS DECGAGVFMG SHFDRHYCGK CCLTYCFNKP  60
   61 EDK

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.555	0.891	protein modification process	b.34.2	SH3-domain
View	Download	0.238	0.025	protein modification process	b.34.1	C-terminal domain of transcriptional repressors
View	Download	0.265	0.000	protein modification process	d.58.1	4Fe-4S ferredoxins
View	Download	0.341	0.000	protein modification process	d.58.17	Metal-binding domain

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits