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View Structure Prediction Details

Protein: gi|123982305, gi...
Organism: synthetic construct
Length: 469 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|123982305, gi....

Description E-value Query
Range
Subject
Range
DPOD2_BOVIN - DNA polymerase delta subunit 2 OS=Bos taurus GN=POLD2 PE=1 SV=2
0.0 [1..469] [1..469]
gi|74010360 - gi|74010360|ref|XP_539802.2| PREDICTED: similar to DNA polymerase delta subunit 2 (DNA polymerase de...
0.0 [1..469] [1..469]
DPOD2_MOUSE - DNA polymerase delta subunit 2 OS=Mus musculus GN=Pold2 PE=1 SV=2
0.0 [1..469] [1..469]
DPOD2_RAT - DNA polymerase delta subunit 2 OS=Rattus norvegicus GN=Pold2 PE=1 SV=1
0.0 [1..469] [1..469]
gi|109066702, gi... - gi|109066704|ref|XP_001094281.1| PREDICTED: polymerase (DNA directed), delta 2, regulatory subunit i...
gi|67970282 - gi|67970282|dbj|BAE01484.1| unnamed protein product [Macaca fascicularis]
0.0 [1..458] [1..458]
gi|182891524, gi... - gi|28279582|gb|AAH45410.1| Pold2 protein [Danio rerio], gi|182891524|gb|AAI64684.1| Pold2 protein [D...
0.0 [1..461] [1..459]
gi|114613131 - gi|114613131|ref|XP_528027.2| PREDICTED: polymerase (DNA directed), delta 2, regulatory subunit [Pan...
0.0 [1..458] [1..444]

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Predicted Domain #1
Region A:
Residues: [1-188]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFSEQAAQRA HTLLSPPSAN NATFARVPVA TYTNSSQPFR LGERSFSRQY AHIYATRLIQ  60
   61 MRPFLENRAQ QHWGSGVGVK KLCELQPEEK CCVVGTLFKA MPLQPSILRE VSEEHNLLPQ 120
  121 PPRSKYIHPD DELVLEDELQ RIKLKGTIDV SKLVTGTVLA VFGSVRDDGK FLVEDYCFAD 180
  181 LAPQKPAP

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [189-469]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PLDTDRFVLL VSGLGLGGGG GESLLGTQLL VDVVTGQLGD EGEQCSAAHV SRVILAGNLL  60
   61 SHSTQSRDSI NKAKYLTKKT QAASVEAVKM LDEILLQLSA SVPVDVMPGE FDPTNYTLPQ 120
  121 QPLHPCMFPL ATAYSTLQLV TNPYQATIDG VRFLGTSGQN VSDIFRYSSM EDHLEILEWT 180
  181 LRVRHISPTA PDTLGCYPFY KTDPFIFPEC PHVYFCGNTP SFGSKIIRGP EDQTVLLVTV 240
  241 PDFSATQTAC LVNLRSLACQ PISFSGFGAE DDDLGGLGLG P

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 1.09
Match: 2hy1A
Description: No description for 2hy1A was found.

Predicted functions:

Term Confidence Notes
hydrolase activity 2.89784024382425 bayes_pls_golite062009
hydrolase activity, acting on ester bonds 2.54644459918406 bayes_pls_golite062009
transferase activity, transferring phosphorus-containing groups 1.75775204356118 bayes_pls_golite062009
transferase activity 1.71554219929081 bayes_pls_golite062009
binding 1.30309680165893 bayes_pls_golite062009
catalytic activity 1.30037658165549 bayes_pls_golite062009
protein serine/threonine phosphatase activity 1.17916462117542 bayes_pls_golite062009
phosphoric ester hydrolase activity 0.950264524479969 bayes_pls_golite062009
phosphatase activity 0.829761417192212 bayes_pls_golite062009
phosphoprotein phosphatase activity 0.768201004870964 bayes_pls_golite062009
structural molecule activity 0.211411396269789 bayes_pls_golite062009
protein binding 0.20380491058914 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle