YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|229509336, gi...
Organism:	Vibrio cholerae B33
Length:	262 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|229509336, gi....

Description	E-value	Query Range	Subject Range
tr\|D7HGC5\|D7HGC5... - Putative uncharacterized protein OS=Vibrio cholerae RC385 GN=VCRC385_03701 PE=4 SV=1 gi\|194534752, gi... - gi\|75823570\|ref\|ZP_00753062.1\| COG3774: Mannosyltransferase OCH1 and related enzymes [Vibrio cholera...	283.0	[0..1]	[262..1]
gi\|121729449, gi... - gi\|75814866\|ref\|ZP_00745410.1\| COG3774: Mannosyltransferase OCH1 and related enzymes [Vibrio cholera...	282.0	[0..1]	[262..1]
tr\|A0A085T8D8\|A0... - Glycosyltransferase sugar-binding region containing DXD motif family protein OS=Vibrio cholerae GN=D... gi\|254225695, gi... - gi\|75819366\|ref\|ZP_00749449.1\| COG3774: Mannosyltransferase OCH1 and related enzymes [Vibrio cholera...	275.0	[0..3]	[262..1]
gi\|18653302 - gi\|18653302\|gb\|AAL77372.1\|AF449195_7 putative glycosyl transferase [Vibrio cholerae]	275.0	[0..3]	[262..1]
gi\|15602981, gi\|... - gi\|15602981\|ref\|NP_246053.1\| hypothetical protein PM1116 [Pasteurella multocida subsp. multocida str...	253.0	[0..4]	[261..7]
gi\|126098117, gi... - gi\|126209325\|ref\|YP_001054550.1\| glycosyltransferase [Actinobacillus pleuropneumoniae L20], gi\|12609... gi\|165977307, gi... - gi\|165977307\|ref\|YP_001652900.1\| glycosyltransferase [Actinobacillus pleuropneumoniae serovar 3 str.... gi\|46143752 - gi\|46143752\|ref\|ZP_00204565.1\| COG3774: Mannosyltransferase OCH1 and related enzymes [Actinobacillus...	244.0	[0..7]	[261..10]
gi\|52306596, gi\|... - gi\|52424544\|ref\|YP_087681.1\| hypothetical protein MS0489 [Mannheimia succiniciproducens MBEL55E], gi...	229.0	[0..5]	[262..8]
gi\|15155829, gi\|... - gi\|15888183\|ref\|NP_353864.1\| hypothetical protein AGR_C_1538 [Agrobacterium tumefaciens str. C58], g... gi\|25343478 - pir\|\|H97461 hypothetical protein AGR_C_1538 [imported] - Agrobacterium tumefaciens (strain C58, Cere...	217.0	[0..1]	[251..10]
SUR1 - Probable catalytic subunit of a mannosylinositol phosphorylceramide (MIPC) synthase, forms a complex... SUR1_YEAST - Mannosyl phosphorylinositol ceramide synthase SUR1 OS=Saccharomyces cerevisiae (strain ATCC 204508 /...	202.0	[0..8]	[261..7]

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Predicted Domain #1

Region A:
Residues: [1-262]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNMSKVTVLI ANRLIRLTGN LFKMLSYPFH WVFPKLRFTI PAYSPAKLKM RANATIPRTI  60
   61 WQTNFTDQAS LPVYLNYLFN RLMSLNCDYR YVSTEARGEF LKEHTSPEVY DAYSRLTNGA 120
  121 AQADLWRLVV LNTYGGVYMD IDATLVWPLD KLLGDSQELY IRIKNNTEIT NYFIATAPNN 180
  181 PDLQATIEQV VYNVNHYEPS MGVYHSTGPT VLNNILSAKA VIHTQDRKYV CIQGTFTNEH 240
  241 FQYIDKPRGK WTHINPEDLV KK

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.97
Match:	2bvlA
Description:	Crystal structure of the catalytic domain of toxin B from Clostridium difficile in complex with UDP, Glc and manganese ion
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
catalytic activity	0.973365540409509	bayes_pls_golite062009
transferase activity	0.677420913179584	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: