YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|148668255, gi...
Organism:	Mus musculus
Length:	141 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|148668255, gi....

Description	E-value	Query Range	Subject Range
gi\|109020296 - gi\|109020296\|ref\|XP_001083984.1\| PREDICTED: hypothetical protein [Macaca mulatta]	105.0	[0..1]	[113..1]
gi\|1363145, gi\|2... - gi\|22449785\|emb\|CAA39842.1\| HSA-B [Mus musculus], pir\|\|A61639 heat-stable antigen-related hypothetic...	103.0	[0..22]	[87..21]
CD24_RAT - Signal transducer CD24 OS=Rattus norvegicus GN=Cd24 PE=2 SV=1	86.0	[0..1]	[63..1]
gi\|119901307, gi... - gi\|73586563\|gb\|AAI02834.1\| MGC127538 protein [Bos taurus], gi\|194664954\|ref\|XP_001787821.1\| PREDICTE...	74.0	[0..1]	[74..1]
gi\|396168 - gi\|396168\|emb\|CAA49195.1\| cell surface antigen [Homo sapiens]	72.0	[0..1]	[74..1]
gi\|60652927, gi\|... - gi\|60652927\|gb\|AAX29158.1\| CD24 antigen [synthetic construct], gi\|60652925\|gb\|AAX29157.1\| CD24 antig...	61.0	[0..1]	[67..1]

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Predicted Domain #1

Region A:
Residues: [1-141]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGRAMVARLG LGLLLLALLL PTQIYCNQTS VAPFSGNQNI SASPNPSNAT TRGGGSSLQS  60
   61 TAGLLALSST SLLLETQARK RLYFPIFYTY PKWQPQVQCD QEETGPPRIV CYHTSTENTE 120
  121 NSKFDGIKGR VKGLREERCR Y

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits