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View Structure Prediction Details

Protein: gi|148668255, gi...
Organism: Mus musculus
Length: 141 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|148668255, gi....

Description E-value Query
Range
Subject
Range
gi|109020296 - gi|109020296|ref|XP_001083984.1| PREDICTED: hypothetical protein [Macaca mulatta]
105.0 [0..1] [113..1]
gi|1363145, gi|2... - gi|22449785|emb|CAA39842.1| HSA-B [Mus musculus], pir||A61639 heat-stable antigen-related hypothetic...
103.0 [0..22] [87..21]
CD24_RAT - Signal transducer CD24 OS=Rattus norvegicus GN=Cd24 PE=2 SV=1
86.0 [0..1] [63..1]
gi|119901307, gi... - gi|73586563|gb|AAI02834.1| MGC127538 protein [Bos taurus], gi|194664954|ref|XP_001787821.1| PREDICTE...
74.0 [0..1] [74..1]
gi|396168 - gi|396168|emb|CAA49195.1| cell surface antigen [Homo sapiens]
72.0 [0..1] [74..1]
gi|60652927, gi|... - gi|60652927|gb|AAX29158.1| CD24 antigen [synthetic construct], gi|60652925|gb|AAX29157.1| CD24 antig...
61.0 [0..1] [67..1]

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Predicted Domain #1
Region A:
Residues: [1-141]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGRAMVARLG LGLLLLALLL PTQIYCNQTS VAPFSGNQNI SASPNPSNAT TRGGGSSLQS  60
   61 TAGLLALSST SLLLETQARK RLYFPIFYTY PKWQPQVQCD QEETGPPRIV CYHTSTENTE 120
  121 NSKFDGIKGR VKGLREERCR Y

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

    MCM
Score
SCOP
Match
SCOP Description
View Download 0.623 c.47.1 Thioredoxin-like
View Download 0.573 c.47.1 Thioredoxin-like
View Download 0.483 c.95.1 Thiolase-like
View Download 0.468 a.27.1 Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases
View Download 0.464 c.97.1 Cytidine deaminase-like


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle