YRC Public Data Repository - Protein Structure Prediction

Protein:	LRC10_MOUSE
Organism:	Mus musculus
Length:	274 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for LRC10_MOUSE.

Description	E-value	Query Range	Subject Range
gi\|75907715, gi\|... - gi\|75907715\|ref\|YP_322011.1\| small GTP-binding protein domain-containing protein [Anabaena variabili...	247.0	[0..1]	[272..145]
gi\|113477255, gi... - gi\|71673924\|ref\|ZP_00671672.1\| Small GTP-binding protein domain [Trichodesmium erythraeum IMS101], g...	245.0	[0..1]	[273..68]
gi\|186464136, gi... - gi\|23128321\|ref\|ZP_00110172.1\| COG4886: Leucine-rich repeat (LRR) protein [Nostoc punctiforme PCC 73...	241.0	[0..1]	[272..214]
FBpp0300846 - type=protein; loc=3R:join(22363345..22363506,22370765..22370882,22380079..22380661,22380955..2238137...	239.0	[0..1]	[271..102]
gi\|17227620, gi\|... - gi\|17227620\|ref\|NP_484168.1\| leucine-rich repeat-containing protein [Nostoc sp. PCC 7120], gi\|171351... gi\|25531208 - pir\|\|AD1822 leucine-rich-repeat protein [imported] - Nostoc sp. (strain PCC 7120)	239.0	[0..1]	[272..122]

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Predicted Domain #1

Region A:
Residues: [1-274]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGNTIRAFVA FIPTDRCQSY VVGDLREMPL DRMVDLSGSQ LRRFPLHVCS FTELVKLYLS  60
   61 DNHLHSLPPD LAQLQNLQIL ALDFNNFKAL PRVVCTLKQL CILYLGNNKL CDLPDELSLL 120
  121 QNLRTLWLES NCLTRLPDVV CELSLLKTLH AGSNALRLLP GQLRRLRELR TIWLSGNQLA 180
  181 DFPSVLLRMP FLEVIDVDRN SIRYFPSLAH LTNLKLVIYD HNPCRNAPKV GKGVRRVGRW 240
  241 AEETPEPDPR KARRYALAKE ENQEPPPPLL PSSS

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	31.30103
Match:	2omuA
Description:	No description for 2omuA was found.

Predicted functions:

Term	Confidence	Notes
binding	1.43625872369727	bayes_pls_golite062009
protein binding	0.669091045213589	bayes_pls_golite062009
G-protein coupled receptor activity	0.35956081133111	bayes_pls_golite062009
cytoskeletal protein binding	0.266755644119785	bayes_pls_golite062009
receptor activity	0.262217350740575	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: