YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|27734108, gi\|...
Organism:	Mus musculus
Length:	286 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|27734108, gi|....

Description	E-value	Query Range	Subject Range
gi\|91094905 - gi\|91094905\|ref\|XP_973449.1\| PREDICTED: similar to CG4643 CG4643-PA [Tribolium castaneum]	217.0	[0..33]	[286..3]
gi\|61818451 - gi\|61818451\|ref\|XP_612338.1\| PREDICTED: similar to F-box protein 45 [Bos taurus]	215.0	[0..38]	[286..33]
FBSP1_MOUSE - F-box/SPRY domain-containing protein 1 OS=Mus musculus GN=Fbxo45 PE=1 SV=2	214.0	[0..38]	[286..38]
FBSP1_XENLA - F-box/SPRY domain-containing protein 1 OS=Xenopus laevis GN=fbxo45 PE=2 SV=1	213.0	[0..35]	[286..29]
FBSP1_DANRE - F-box/SPRY domain-containing protein 1 OS=Danio rerio GN=fbxo45 PE=2 SV=2	212.0	[0..36]	[286..42]
gi\|74002949 - gi\|74002949\|ref\|XP_851899.1\| PREDICTED: similar to F-box protein 45 [Canis familiaris]	211.0	[0..38]	[286..35]
gi\|58379423, gi\|... - gi\|58379423\|ref\|XP_309899.2\| ENSANGP00000002531 [Anopheles gambiae str. PEST], gi\|55244299\|gb\|EAA056...	210.0	[0..36]	[286..5]
Fsn-PA, Fsn-PB - This gene is referred to in FlyBase by the symbol Dmel\Fsn (CG4643, FBgn0043010). It is a protein_co... gi\|220954268, gi... - gi\|220954268\|gb\|ACL89677.1\| CG4643-PA [synthetic construct], gi\|220944470\|gb\|ACL84778.1\| CG4643-PA [...	208.0	[0..43]	[286..13]
FBSP1_AEDAE - F-box/SPRY domain-containing protein 1 OS=Aedes aegypti GN=Fsn PE=3 SV=1	207.0	[0..36]	[286..9]
gi\|48140090 - gi\|48140090\|ref\|XP_397079.1\| PREDICTED: similar to CG4643-PA, isoform A [Apis mellifera]	200.0	[0..36]	[286..5]

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Predicted Domain #1

Region A:
Residues: [1-73]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAAPGPGAGA ASGGASGGGA GAGGGACAGS GSSGVGGRLP SRVLELVFSY LELSELRSCA  60
   61 LVCKHWYRCL HGD

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	3.02
Match:	2e31A
Description:	No description for 2e31A was found.

Predicted Domain #2

Region A:
Residues: [74-286]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ENSEVWRSLC ARSLAEEALR TDILCNLPSY KAKVRAFQHA FSTNDCSRNV YIKKNGFTLH  60
   61 RNPIAQSTDG ARTKIGFSEG RHAWEVWWEG PLGTVAVIGI ATKRAPMQCQ GYVALLGSDD 120
  121 QSWGWNLVDN NLLHNGEVNG SFPQCNNAPK YQIGERIRVI LDMEDKTLAF ERGYEFLGVA 180
  181 FRGLPKACLY PAVSAVYGNT EVTLVYLGKP LDG

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	36.30103
Match:	2ihsA
Description:	No description for 2ihsA was found.

Predicted functions:

Term	Confidence	Notes
binding	1.49960529341364	bayes_pls_golite062009
protein binding	0.501917973797597	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: