YRC Public Data Repository - Protein Structure Prediction

Protein:	S5A2_MOUSE
Organism:	Mus musculus
Length:	254 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for S5A2_MOUSE.

Description	E-value	Query Range	Subject Range
S5A2_RAT - 3-oxo-5-alpha-steroid 4-dehydrogenase 2 OS=Rattus norvegicus GN=Srd5a2 PE=1 SV=1	226.0	[0..1]	[254..1]
gi\|85567678, gi\|... - gi\|85567678\|gb\|AAI12253.1\| Steroid-5-alpha-reductase, alpha polypeptide 2 (3-oxo-5 alpha-steroid del... gi\|254071237, gi... - gi\|254071237\|gb\|ACT64378.1\| steroid-5-alpha-reductase, alpha polypeptide 2 (3-oxo-5 alpha-steroid de...	224.0	[0..1]	[254..1]
S5A2_MACFA - 3-oxo-5-alpha-steroid 4-dehydrogenase 2 OS=Macaca fascicularis GN=SRD5A2 PE=1 SV=1	221.0	[0..1]	[254..1]
gi\|109102574 - gi\|109102574\|ref\|XP_001105329.1\| PREDICTED: steroid-5-alpha-reductase, alpha polypeptide 2 (3-oxo-5 ...	221.0	[0..1]	[254..1]
gi\|76646522 - gi\|76646522\|ref\|XP_605410.2\| PREDICTED: similar to steroid 5-alpha-reductase 2 [Bos taurus]	215.0	[0..1]	[254..1]
S5A2_PIG - 3-oxo-5-alpha-steroid 4-dehydrogenase 2 OS=Sus scrofa GN=SRD5A2 PE=2 SV=2	213.0	[0..1]	[254..1]
gi\|73980711 - gi\|73980711\|ref\|XP_532922.2\| PREDICTED: similar to 3-oxo-5 alpha-steroid 4-dehydrogenase 2 [Canis fa...	211.0	[0..1]	[254..1]

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Predicted Domain #1

Region A:
Residues: [1-70]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPIVCHQVPV LAGSATLATM GTLILCFGKP ASYGKHSESV SSGVPLLPAR IAWFLQELPS  60
   61 FVVSVGMLAW

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.406	N/A	N/A	a.5.2	UBA-like
View	Download	0.255	N/A	N/A	a.5.2	UBA-like
View	Download	0.255	N/A	N/A	a.5.2	UBA-like

Predicted Domain #2

Region A:
Residues: [71-254]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 QPRSLFGPPG NVLLGLFSAH YFHRTFIYSL LTRGRPLSAV IFLKATAFCI GNGLLQAYYL  60
   61 VYCAEYPEEW YTDMRFSVGV FFFILGMGIN IHSDCMLRQL RKPGEVIYRI PQGGLFTYVS 120
  121 GANFLGEIIE WMGYALATWS VPAFAFAFFT LCFLGMQAFY HHRFYLKMFK DYPKSRKALI 180
  181 PFIF

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	85.031517
Match:	PF02544.7
Description:	No description for PF02544.7 was found.

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits