YRC Public Data Repository - Protein Structure Prediction

Protein:	EMC3_MOUSE
Organism:	Mus musculus
Length:	261 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for EMC3_MOUSE.

Description	E-value	Query Range	Subject Range
ENSCJAT00000031683 - null gi\|55619789 - gi\|55619789\|ref\|XP_516272.1\| PREDICTED: hypothetical protein isoform 3 [Pan troglodytes] TM111_PONPY - Transmembrane protein 111 - Pongo pygmaeus (Orangutan) tr\|M3WUY6\|M3WUY6... - ER membrane protein complex subunit 3 OS=Felis catus GN=EMC3 PE=3 SV=1 gi\|149728297 - gi\|149728297\|ref\|XP_001494113.1\| PREDICTED: similar to Transmembrane protein 111 [Equus caballus] EMC3_PONAB - ER membrane protein complex subunit 3 OS=Pongo abelii GN=EMC3 PE=2 SV=3 TMEM111 - transmembrane protein 111 gi\|57100904 - gi\|57100904\|ref\|XP_533744.1\| PREDICTED: similar to 30 kDa protein isoform 1 [Canis familiaris]	432.0	[0..1]	[261..1]
EMC3_BOVIN - ER membrane protein complex subunit 3 OS=Bos taurus GN=EMC3 PE=2 SV=3	432.0	[0..1]	[261..1]
gi\|50754191 - gi\|50754191\|ref\|XP_414280.1\| PREDICTED: hypothetical protein [Gallus gallus]	424.0	[0..1]	[261..1]
gi\|56673106 - gi\|56673106\|gb\|AAW19648.1\| 30kDa protein [Danio rerio]	424.0	[0..1]	[261..1]
gi\|47229601 - gi\|47229601\|emb\|CAG06797.1\| unnamed protein product [Tetraodon nigroviridis]	421.0	[0..1]	[261..1]
gi\|62858123 - gi\|62858123\|ref\|NP_001016907.1\| partial optokinetic response b [Xenopus (Silurana) tropicalis]	416.0	[0..1]	[261..1]
gi\|147904527, gi... - gi\|56270439\|gb\|AAH87323.1\| LOC495954 protein [Xenopus laevis], gi\|147904527\|ref\|NP_001088690.1\| hypo...	391.0	[0..1]	[248..1]

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Predicted Domain #1

Region A:
Residues: [1-187]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAGPELLLDS NIRLWVVLPI VIITFFVGMI RHYVSILLQS DKKLTQEQVS DSQVLIRSRV  60
   61 LRENGKYIPK QSFLTRKYYF NNPEDGFFKK TKRKVVPPSP MTDPTMLTDM MKGNVTNVLP 120
  121 MILIGGWINM TFSGFVTTKV PFPLTLRFKP MLQQGIELLT LDASWVSSAS WYFLNVFGLR 180
  181 SIYSLIL

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [188-261]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GQDNAADQSR MMQEQMTGAA MAMPADTNKA FKTEWEALEL TDHQWALDDV EEELMARDLH  60
   61 FEGMFKKELQ TSIF

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.981	N/A	N/A	a.8.11	Description not found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits