YRC Public Data Repository - Protein Structure Prediction

Protein:	EMC3_MOUSE
Organism:	Mus musculus
Length:	261 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for EMC3_MOUSE.

Description	E-value	Query Range	Subject Range
ENSCJAT00000031683 - null gi\|55619789 - gi\|55619789\|ref\|XP_516272.1\| PREDICTED: hypothetical protein isoform 3 [Pan troglodytes] TM111_PONPY - Transmembrane protein 111 - Pongo pygmaeus (Orangutan) tr\|M3WUY6\|M3WUY6... - ER membrane protein complex subunit 3 OS=Felis catus GN=EMC3 PE=3 SV=1 gi\|149728297 - gi\|149728297\|ref\|XP_001494113.1\| PREDICTED: similar to Transmembrane protein 111 [Equus caballus] EMC3_PONAB - ER membrane protein complex subunit 3 OS=Pongo abelii GN=EMC3 PE=2 SV=3 TMEM111 - transmembrane protein 111 gi\|57100904 - gi\|57100904\|ref\|XP_533744.1\| PREDICTED: similar to 30 kDa protein isoform 1 [Canis familiaris]	432.0	[0..1]	[261..1]
EMC3_BOVIN - ER membrane protein complex subunit 3 OS=Bos taurus GN=EMC3 PE=2 SV=3	432.0	[0..1]	[261..1]
gi\|50754191 - gi\|50754191\|ref\|XP_414280.1\| PREDICTED: hypothetical protein [Gallus gallus]	424.0	[0..1]	[261..1]
gi\|56673106 - gi\|56673106\|gb\|AAW19648.1\| 30kDa protein [Danio rerio]	424.0	[0..1]	[261..1]
gi\|47229601 - gi\|47229601\|emb\|CAG06797.1\| unnamed protein product [Tetraodon nigroviridis]	421.0	[0..1]	[261..1]
gi\|62858123 - gi\|62858123\|ref\|NP_001016907.1\| partial optokinetic response b [Xenopus (Silurana) tropicalis]	416.0	[0..1]	[261..1]
gi\|147904527, gi... - gi\|56270439\|gb\|AAH87323.1\| LOC495954 protein [Xenopus laevis], gi\|147904527\|ref\|NP_001088690.1\| hypo...	391.0	[0..1]	[248..1]

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Predicted Domain #1

Region A:
Residues: [1-187]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAGPELLLDS NIRLWVVLPI VIITFFVGMI RHYVSILLQS DKKLTQEQVS DSQVLIRSRV  60
   61 LRENGKYIPK QSFLTRKYYF NNPEDGFFKK TKRKVVPPSP MTDPTMLTDM MKGNVTNVLP 120
  121 MILIGGWINM TFSGFVTTKV PFPLTLRFKP MLQQGIELLT LDASWVSSAS WYFLNVFGLR 180
  181 SIYSLIL

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [188-261]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GQDNAADQSR MMQEQMTGAA MAMPADTNKA FKTEWEALEL TDHQWALDDV EEELMARDLH  60
   61 FEGMFKKELQ TSIF

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.981	N/A	N/A	a.8.11	Description not found.
View	Download	0.944	N/A	N/A	a.52.1	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin
View	Download	0.930	N/A	N/A	a.24.18	Description not found.
View	Download	0.917	N/A	N/A	a.8.11	Description not found.
View	Download	0.914	N/A	N/A	a.239.1	Description not found.
View	Download	0.869	N/A	N/A	a.52.1	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin
View	Download	0.769	N/A	N/A	a.46.1	Methionine synthase domain
View	Download	0.755	N/A	N/A	a.65.1	Annexin
View	Download	0.733	N/A	N/A	a.24.13	Domain of the SRP/SRP receptor G-proteins

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits