YRC Public Data Repository - Protein Structure Prediction

Protein:	DYR_MOUSE
Organism:	Mus musculus
Length:	187 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for DYR_MOUSE.

Description	E-value	Query Range	Subject Range
gi\|37654603 - gi\|37654603\|gb\|AAQ96635.1\| ubiquitin-ts degron; DHFR [Degron tagging vector pSMRG2+] gi\|37654599 - gi\|37654599\|gb\|AAQ96632.1\| ubiquitin-ts degron; DHFR [Degron tagging vector pSMUG2+]	239.0	[0..1]	[187..83]
gi\|85658490, gi\|... - gi\|88601320\|tpd\|FAA00073.1\| TPA: dihydrofolate reductase [Cricetulus griseus], gi\|85658490\|dbj\|BAE78... gi\|304502 - gi\|304502\|gb\|AAA36970.1\| dihydrofolate reductase (EC 1.5.1.3)	238.0	[0..1]	[186..1]
DYR_RAT - Dihydrofolate reductase OS=Rattus norvegicus GN=Dhfr PE=2 SV=3	238.0	[0..1]	[187..1]
gi\|50711 - gi\|50711\|emb\|CAA39544.1\| dihydrofolate reductase [Mus musculus]	238.0	[0..1]	[187..1]
DYR_MESAU - Dihydrofolate reductase OS=Mesocricetus auratus GN=DHFR PE=2 SV=4 gi\|191046 - gi\|191046\|gb\|AAA36971.1\| dihydrofolate reductase	235.0	[0..1]	[186..1]
gi\|304504, gi\|631622 - pir\|\|S42446 dihydrofolate reductase (EC 1.5.1.3) - Chinese hamster, gi\|304504\|gb\|AAA36976.1\| dihydr...	233.0	[0..1]	[186..1]
DYR_PIG - Dihydrofolate reductase OS=Sus scrofa GN=DHFR PE=1 SV=1 gi\|66093 - pir\|\|RDPGD dihydrofolate reductase (EC 1.5.1.3) - pig	233.0	[0..3]	[187..2]

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Predicted Domain #1

Region A:
Residues: [1-187]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVRPLNCIVA VSQNMGIGKN GDLPWPPLRN EFKYFQRMTT TSSVEGKQNL VIMGRKTWFS  60
   61 IPEKNRPLKD RINIVLSREL KEPPRGAHFL AKSLDDALRL IEQPELASKV DMVWIVGGSS 120
  121 VYQEAMNQPG HLRLFVTRIM QEFESDTFFP EIDLGKYKLL PEYPGVLSEV QEEKGIKYKF 180
  181 EVYEKKD

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	62.30103
Match:	2fzjA
Description:	No description for 2fzjA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits