YRC Public Data Repository - Protein Structure Prediction

Protein:	CX7A2_MOUSE
Organism:	Mus musculus
Length:	83 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CX7A2_MOUSE.

Description	E-value	Query Range	Subject Range
gi\|119569131, gi... - gi\|56203513\|emb\|CAI19899.1\| cytochrome c oxidase subunit VIIa polypeptide 2 (liver) [Homo sapiens], ...	137.0	[0..1]	[83..33]
CX7A1_BOVIN - Cytochrome c oxidase subunit 7A1, mitochondrial OS=Bos taurus GN=COX7A1 PE=1 SV=2	135.0	[0..6]	[82..4]
CX7A1_PIG - Cytochrome c oxidase subunit 7A1, mitochondrial OS=Sus scrofa GN=COX7A1 PE=3 SV=1	134.0	[0..6]	[82..4]
gi\|114608148, gi... - gi\|114608148\|ref\|XP_001143369.1\| PREDICTED: similar to cytochrome c oxidase subunit VIIa polypeptide...	134.0	[0..1]	[83..33]
CX7A2_RAT - Cytochrome c oxidase subunit 7A2, mitochondrial OS=Rattus norvegicus GN=Cox7a2 PE=1 SV=1	133.0	[0..1]	[83..1]
gi\|60652707, gi\|... - gi\|60652709\|gb\|AAX29049.1\| cytochrome c oxidase subunit VIIa polypeptide 1 [synthetic construct], gi...	131.0	[0..6]	[81..4]
gi\|56609206 - gi\|56609206\|gb\|AAW03192.1\| mitochondrial cytochrome c oxidase subunit 7AH [Tarsius syrichta]	131.0	[0..6]	[82..4]

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Predicted Domain #1

Region A:
Residues: [1-83]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLRNLLALRQ IAQRTISTTS RRHFENKVPE KQKLFQEDNG MPVHLKGGAS DALLYRATMA  60
   61 LTLGGTAYAI YLLAMAAFPK KQN

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	25.69897
Match:	1occJ
Description:	Mitochondrial cytochrome c oxidase subunit VIIa
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
cytochrome-c oxidase activity	3.34880493269526	bayes_pls_golite062009
oxidoreductase activity, acting on heme group of donors	3.34880493269526	bayes_pls_golite062009
oxidoreductase activity, acting on heme group of donors, oxygen as acceptor	3.34880493269526	bayes_pls_golite062009
heme-copper terminal oxidase activity	3.12044190384374	bayes_pls_golite062009
hydrogen ion transmembrane transporter activity	2.42851552159213	bayes_pls_golite062009
monovalent inorganic cation transmembrane transporter activity	2.29138932748536	bayes_pls_golite062009
inorganic cation transmembrane transporter activity	1.77050600432638	bayes_pls_golite062009
cation transmembrane transporter activity	1.52720174806199	bayes_pls_golite062009
ion transmembrane transporter activity	1.34701554601979	bayes_pls_golite062009
oxidoreductase activity	1.20876870883574	bayes_pls_golite062009
catalytic activity	0.287695754348243	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: