YRC Public Data Repository - Protein Structure Prediction

Protein:	UTP11_MOUSE
Organism:	Mus musculus
Length:	253 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for UTP11_MOUSE.

Description	E-value	Query Range	Subject Range
gi\|157818659, gi... - gi\|27716127\|ref\|XP_233498.1\| PREDICTED: similar to UTP11-like, U3 small nucleolar ribonucleoprotein,...	267.0	[0..1]	[253..1]
gi\|197101757 - gi\|197101757\|ref\|NP_001126408.1\| UTP11-like, U3 small nucleolar ribonucleoprotein [Pongo abelii] gi\|55731348 - gi\|55731348\|emb\|CAH92388.1\| hypothetical protein [Pongo abelii]	266.0	[0..1]	[253..1]
UTP11L - UTP11-like, U3 small nucleolar ribonucleoprotein, (yeast)	264.0	[0..1]	[253..1]
gi\|55586846 - gi\|55586846\|ref\|XP_513332.1\| PREDICTED: UTP11-like, U3 small nucleolar ribonucleoprotein, [Pan trogl...	263.0	[0..1]	[253..1]
gi\|76614468 - gi\|76614468\|ref\|XP_617852.2\| PREDICTED: similar to UTP11-like, U3 small nucleolar ribonucleoprotein,...	256.0	[0..1]	[253..1]
gi\|57096574 - gi\|57096574\|ref\|XP_532552.1\| PREDICTED: similar to Probable U3 small nucleolar RNA-associated protei...	250.0	[0..1]	[253..1]
gi\|31209297, gi\|... - gi\|31209297\|ref\|XP_313615.1\| ENSANGP00000013368 [Anopheles gambiae str. PEST], gi\|30176757\|gb\|EAA091... AGAP004336-PA - UTP11-like, U3 small nucleolar ribonucleoprotein\|protein_coding\|2R:54821708:54822466:1\|gene:AGAP0043...	247.0	[0..3]	[253..2]
gi\|50759728 - gi\|50759728\|ref\|XP_417753.1\| PREDICTED: hypothetical protein [Gallus gallus]	239.0	[0..1]	[253..1]

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Predicted Domain #1

Region A:
Residues: [1-129]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSAAFRKAAK TRQREHRERS QPGFRKRLGL LEKKKDYKLR ANDYHKKQDF LRALRKKALE  60
   61 KNPDEFYYKM TRAKLQDGVH IFKENKEEVT AEQLKLMRTQ DIKYIEMKRV AEAKKIERLK 120
  121 SELHLLDFQ

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [130-253]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GKQQKKHVFF FDTKKEVERF DVATHLQTAP ELVDRVYNRP RIETLQKERV KGATPQTGLK  60
   61 RIAKERQKQY DCLTQRIERE KQLFVVAQKI QTRKDLMDKT QKVKVKKETV NSPAIYRFQT 120
  121 RRKR

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits