YRC Public Data Repository - Protein Structure Prediction

Protein:	UTP11_MOUSE
Organism:	Mus musculus
Length:	253 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for UTP11_MOUSE.

Description	E-value	Query Range	Subject Range
gi\|157818659, gi... - gi\|27716127\|ref\|XP_233498.1\| PREDICTED: similar to UTP11-like, U3 small nucleolar ribonucleoprotein,...	267.0	[0..1]	[253..1]
gi\|197101757 - gi\|197101757\|ref\|NP_001126408.1\| UTP11-like, U3 small nucleolar ribonucleoprotein [Pongo abelii] gi\|55731348 - gi\|55731348\|emb\|CAH92388.1\| hypothetical protein [Pongo abelii]	266.0	[0..1]	[253..1]
UTP11L - UTP11-like, U3 small nucleolar ribonucleoprotein, (yeast)	264.0	[0..1]	[253..1]
gi\|55586846 - gi\|55586846\|ref\|XP_513332.1\| PREDICTED: UTP11-like, U3 small nucleolar ribonucleoprotein, [Pan trogl...	263.0	[0..1]	[253..1]
gi\|76614468 - gi\|76614468\|ref\|XP_617852.2\| PREDICTED: similar to UTP11-like, U3 small nucleolar ribonucleoprotein,...	256.0	[0..1]	[253..1]
gi\|57096574 - gi\|57096574\|ref\|XP_532552.1\| PREDICTED: similar to Probable U3 small nucleolar RNA-associated protei...	250.0	[0..1]	[253..1]
gi\|31209297, gi\|... - gi\|31209297\|ref\|XP_313615.1\| ENSANGP00000013368 [Anopheles gambiae str. PEST], gi\|30176757\|gb\|EAA091... AGAP004336-PA - UTP11-like, U3 small nucleolar ribonucleoprotein\|protein_coding\|2R:54821708:54822466:1\|gene:AGAP0043...	247.0	[0..3]	[253..2]
gi\|50759728 - gi\|50759728\|ref\|XP_417753.1\| PREDICTED: hypothetical protein [Gallus gallus]	239.0	[0..1]	[253..1]

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Predicted Domain #1

Region A:
Residues: [1-129]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSAAFRKAAK TRQREHRERS QPGFRKRLGL LEKKKDYKLR ANDYHKKQDF LRALRKKALE  60
   61 KNPDEFYYKM TRAKLQDGVH IFKENKEEVT AEQLKLMRTQ DIKYIEMKRV AEAKKIERLK 120
  121 SELHLLDFQ

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.490	0.183	rRNA processing	a.25.1	Ferritin-like
View	Download	0.586	0.056	rRNA processing	a.24.3	Cytochromes
View	Download	0.546	0.029	rRNA processing	a.24.9	alpha-catenin/vinculin
View	Download	0.643	0.007	rRNA processing	f.36.1	Neurotransmitter-gated ion-channel pransmembrane pore
View	Download	0.625	N/A	N/A	f.36.1	Neurotransmitter-gated ion-channel pransmembrane pore

Predicted Domain #2

Region A:
Residues: [130-253]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GKQQKKHVFF FDTKKEVERF DVATHLQTAP ELVDRVYNRP RIETLQKERV KGATPQTGLK  60
   61 RIAKERQKQY DCLTQRIERE KQLFVVAQKI QTRKDLMDKT QKVKVKKETV NSPAIYRFQT 120
  121 RRKR

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.651	0.060	rRNA processing	a.27.1	Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases
View	Download	0.635	0.041	rRNA processing	a.7.1	Spectrin repeat
View	Download	0.583	0.011	rRNA processing	a.24.17	Group V grass pollen allergen
View	Download	0.666	0.006	rRNA processing	a.7.6	Ribosomal protein S20
View	Download	0.627	N/A	N/A	i.11.1	Computational models partly based on NMR data

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits