YRC Public Data Repository - Protein Structure Prediction

Protein:	PPR1A_MOUSE
Organism:	Mus musculus
Length:	171 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PPR1A_MOUSE.

Description	E-value	Query Range	Subject Range
gi\|62901876 - gi\|62901876\|gb\|AAY18889.1\| phosphatase-1 inhibitor [synthetic construct]	224.0	[0..2]	[171..26]
PPR1A_CANLF - Protein phosphatase 1 regulatory subunit 1A OS=Canis lupus familiaris GN=PPP1R1A PE=2 SV=1	223.0	[0..1]	[171..1]
gi\|17978643 - gi\|17978643\|gb\|AAL48321.1\| inhibitor-1 [Homo sapiens]	218.0	[0..1]	[171..1]
PPR1A_RAT - Protein phosphatase 1 regulatory subunit 1A OS=Rattus norvegicus GN=Ppp1r1a PE=1 SV=1	216.0	[0..1]	[171..1]
gi\|90081048 - gi\|90081048\|dbj\|BAE90004.1\| unnamed protein product [Macaca fascicularis] gi\|109097063 - gi\|109097063\|ref\|XP_001110247.1\| PREDICTED: similar to Protein phosphatase inhibitor 1 (IPP-1) (I-1)...	211.0	[0..1]	[171..1]
gi\|114644255 - gi\|114644255\|ref\|XP_001156163.1\| PREDICTED: similar to protein phosphatase-1 inhibitor [Pan troglody...	192.0	[0..29]	[171..32]
PPR1A_RABIT - Protein phosphatase 1 regulatory subunit 1A OS=Oryctolagus cuniculus GN=PPP1R1A PE=1 SV=1	183.0	[0..1]	[171..1]

Back

Predicted Domain #1

Region A:
Residues: [1-171]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEPDNSPRKI QFTVPLLEPH LDPEAAEQIR RRRPTPATLV LTSDQSSPEI DEDRIPNSLL  60
   61 KSTLSMSPRQ RKKMTRTTPT MKELQTMVEH HLGQQKQGEE PEGATESTGN QESCPPGIPD 120
  121 TGSASRPDTP GTAQKSAESN PKTQEQCGVE PRTEDSSAHM LPLDSQGASL V

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	111.187087
Match:	PF05395.3
Description:	No description for PF05395.3 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits