YRC Public Data Repository - Protein Structure Prediction

Protein:	THG1_MOUSE
Organism:	Mus musculus
Length:	298 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for THG1_MOUSE.

Description	E-value	Query Range	Subject Range
gi\|62530979 - gi\|62530979\|gb\|AAH92541.1\| Thg1l protein [Mus musculus]	524.0	[0..1]	[298..1]
THG1_RAT - Probable tRNA(His) guanylyltransferase OS=Rattus norvegicus GN=Thg1l PE=2 SV=1	523.0	[0..1]	[298..1]
gi\|8923514, gi\|2... - gi\|8923514\|ref\|NP_060342.1\| interphase cyctoplasmic foci protein 45 [Homo sapiens], gi\|7020726\|dbj\|B...	523.0	[0..1]	[298..1]
gi\|114603135 - gi\|114603135\|ref\|XP_518066.2\| PREDICTED: interphase cytoplasmic foci protein 45 [Pan troglodytes]	522.0	[0..1]	[298..1]
gi\|109079563 - gi\|109079563\|ref\|XP_001113603.1\| PREDICTED: similar to interphase cyctoplasmic foci protein 45 [Maca...	519.0	[0..1]	[298..1]
gi\|57085243 - gi\|57085243\|ref\|XP_536453.1\| PREDICTED: similar to interphase cyctoplasmic foci protein 45 [Canis fa...	510.0	[0..1]	[298..101]
THG1_BOVIN - Probable tRNA(His) guanylyltransferase OS=Bos taurus GN=THG1L PE=2 SV=1	505.0	[0..1]	[298..1]

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Predicted Domain #1

Region A:
Residues: [1-196]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MWAFRTARIG SLLAATSVIL RRCLRLGVAM AKSKFEYVRN FEVQDTCLPH CWVVVRLDGR  60
   61 NFHRFAEEHN FAKPNDSRAL HLMTKCAQTV MEELEDIVIA YGQSDEYSFV FRKKSNWFKR 120
  121 RASKFMTLVA SQFASSYVFY WRDYFEDQPL RYPPGFDGRV VLYPSNQTLK DYLSWRQADC 180
  181 HINNLYNTVF WALIQQ

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [197-298]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SGLTPVQAQQ RLKGTLTADK NEILFSEFHI NYNNEPHMYR KGTVLVWQKV EEVRTQEVRL  60
   61 PAEMEGEKKA VARTRTRVVA LNCDLIGDAF WKEHPEILAE EN

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits