YRC Public Data Repository - Protein Structure Prediction

Protein:	NRK2_MOUSE
Organism:	Mus musculus
Length:	195 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for NRK2_MOUSE.

Description	E-value	Query Range	Subject Range
gi\|55251186 - gi\|55251186\|emb\|CAH68939.1\| novel protein similar to mouse and human uridine kinase-like 1 (Urkl1) [...	181.0	[0..3]	[194..89]
gi\|21619828, gi\|... - gi\|21619828\|gb\|AAH33078.1\| UCKL1 protein [Homo sapiens], gi\|119595593\|gb\|EAW75187.1\| uridine-cytidin...	181.0	[0..3]	[193..99]
gi\|56789602, gi\|... - gi\|56789602\|gb\|AAH88686.1\| LOC496224 protein [Xenopus laevis], gi\|148230078\|ref\|NP_001088880.1\| hypo...	180.0	[0..3]	[194..88]
gi\|60415996, gi\|... - gi\|62751926\|ref\|NP_001015872.1\| MGC107757 protein [Xenopus (Silurana) tropicalis], gi\|60415996\|gb\|AA...	180.0	[0..3]	[194..83]
gi\|76632877 - gi\|76632877\|ref\|XP_881396.1\| PREDICTED: similar to uridine-cytidine kinase 1-like 1 isoform 9 [Bos t...	179.0	[0..3]	[194..84]
gi\|220953536, gi... - gi\|220953536\|gb\|ACL89311.1\| l(2)k01209-PB [synthetic construct], gi\|220943522\|gb\|ACL84304.1\| l(2)k01... l(2)k01209-PC, l... - The gene lethal (2) k01209 is referred to in FlyBase by the symbol Dmel\l(2)k01209 (CG4798, FBgn0022...	179.0	[0..2]	[194..186]

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Predicted Domain #1

Region A:
Residues: [1-195]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKLIIGIGGV TNGGKTTLTN SLLKALPNCC VIHQDDFFKP QDQIAVGEDG FKQWDVLESL  60
   61 DMETMLSTVQ AWVKDPHKFA RAHGVSLQSG ASDTHVLLLE GFLLYSYRPL VDLYSQRYFL 120
  121 TVPYEECKRR RRSRTYMVPD PPGLFDGHVW PMYQKYRREM EQDGVEVVYL DGMKSPEGLF 180
  181 HQVLEDIQNR LLNTS

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	39.154902
Match:	2p0eA
Description:	No description for 2p0eA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits