YRC Public Data Repository - Protein Structure Prediction

Protein:	SL35E_MOUSE, S35...
Organism:	Mus musculus
Length:	265 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SL35E_MOUSE, S35....

Description	E-value	Query Range	Subject Range
gi\|109123815 - gi\|109123815\|ref\|XP_001113968.1\| PREDICTED: similar to solute carrier family 35, member E1 [Macaca m...	206.0	[0..1]	[265..424]
ENSMMUG000000129... - null, null gi\|114675843 - gi\|114675843\|ref\|XP_512469.2\| PREDICTED: hypothetical protein [Pan troglodytes] SLC35E1 - solute carrier family 35, member E1	196.0	[0..1]	[265..1]
gi\|149036180, gi... - gi\|149036180\|gb\|EDL90846.1\| similar to hypothetical protein 6030458H05 (predicted) [Rattus norvegicu...	190.0	[0..1]	[265..1]
gi\|73986253 - gi\|73986253\|ref\|XP_541964.2\| PREDICTED: similar to solute carrier family 35, member E1 [Canis famili...	187.0	[0..1]	[265..145]
gi\|76621180 - gi\|76621180\|ref\|XP_613288.2\| PREDICTED: similar to solute carrier family 35, member E1 [Bos taurus]	180.0	[0..1]	[265..147]
gi\|47085801, gi\|... - gi\|68368559\|ref\|XP_702624.1\| PREDICTED: hypothetical protein XP_697532 [Danio rerio], gi\|47085801\|re...	152.0	[0..1]	[265..115]
gi\|213624292, gi... - gi\|62858489\|ref\|NP_001016384.1\| solute carrier family 35, member E1 [Xenopus (Silurana) tropicalis],...	152.0	[0..1]	[265..123]
gi\|50415160, gi\|... - gi\|50415160\|gb\|AAH77379.1\| MGC81612 protein [Xenopus laevis], gi\|147902010\|ref\|NP_001086741.1\| MGC81...	150.0	[0..1]	[265..1]

Back

Predicted Domain #1

Region A:
Residues: [1-100]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPIWVVLLSR IIMKEKQSTK VYLSLVPIIS GVLLATVTEL SFDVWGLVSA LAATLCFSLQ  60
   61 NIFSKKVLRD SRIHHLRLLN ILGCHAVFFM IPTWVLVDLS

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [101-265]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TFLVSSDLAY VSQWPWTLLL LAVSGFCNFA QNVIAFSILN LISPLSYSVA NATKRIMVIT  60
   61 VSLIMLRNPV TSTNVLGMMT AILGVFLYNK TKYDANQQAR RHLLPISTSD LSSREHLRSP 120
  121 VEKPHNGALF PQQGDFQYRN ILLTDHFQYS RQGHPNSYAL SRHDV

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	3.69897
Match:	2i68A
Description:	No description for 2i68A was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits