YRC Public Data Repository - Protein Structure Prediction

Protein:	SL35E_MOUSE, S35...
Organism:	Mus musculus
Length:	265 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SL35E_MOUSE, S35....

Description	E-value	Query Range	Subject Range
gi\|109123815 - gi\|109123815\|ref\|XP_001113968.1\| PREDICTED: similar to solute carrier family 35, member E1 [Macaca m...	206.0	[0..1]	[265..424]
ENSMMUG000000129... - null, null gi\|114675843 - gi\|114675843\|ref\|XP_512469.2\| PREDICTED: hypothetical protein [Pan troglodytes] SLC35E1 - solute carrier family 35, member E1	196.0	[0..1]	[265..1]
gi\|149036180, gi... - gi\|149036180\|gb\|EDL90846.1\| similar to hypothetical protein 6030458H05 (predicted) [Rattus norvegicu...	190.0	[0..1]	[265..1]
gi\|73986253 - gi\|73986253\|ref\|XP_541964.2\| PREDICTED: similar to solute carrier family 35, member E1 [Canis famili...	187.0	[0..1]	[265..145]
gi\|76621180 - gi\|76621180\|ref\|XP_613288.2\| PREDICTED: similar to solute carrier family 35, member E1 [Bos taurus]	180.0	[0..1]	[265..147]
gi\|47085801, gi\|... - gi\|68368559\|ref\|XP_702624.1\| PREDICTED: hypothetical protein XP_697532 [Danio rerio], gi\|47085801\|re...	152.0	[0..1]	[265..115]
gi\|213624292, gi... - gi\|62858489\|ref\|NP_001016384.1\| solute carrier family 35, member E1 [Xenopus (Silurana) tropicalis],...	152.0	[0..1]	[265..123]
gi\|50415160, gi\|... - gi\|50415160\|gb\|AAH77379.1\| MGC81612 protein [Xenopus laevis], gi\|147902010\|ref\|NP_001086741.1\| MGC81...	150.0	[0..1]	[265..1]

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Predicted Domain #1

Region A:
Residues: [1-100]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPIWVVLLSR IIMKEKQSTK VYLSLVPIIS GVLLATVTEL SFDVWGLVSA LAATLCFSLQ  60
   61 NIFSKKVLRD SRIHHLRLLN ILGCHAVFFM IPTWVLVDLS

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [101-265]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TFLVSSDLAY VSQWPWTLLL LAVSGFCNFA QNVIAFSILN LISPLSYSVA NATKRIMVIT  60
   61 VSLIMLRNPV TSTNVLGMMT AILGVFLYNK TKYDANQQAR RHLLPISTSD LSSREHLRSP 120
  121 VEKPHNGALF PQQGDFQYRN ILLTDHFQYS RQGHPNSYAL SRHDV

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	3.69897
Match:	2i68A
Description:	No description for 2i68A was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits